Browse Element(s) Details


Os.47623.1.A1_at

Description gb:AK073467.1
DB_XREF= gi:32983490
TID=Os.47623.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47623 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033044H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033044H21, full insert sequence.
FL= gb:AK073467.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0311011/11GRAS family transcription factor containing protein, expressed
LOC_Os12g028702/11GRAS family transcription factor containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03090OsAffx.22492.1.S1_x_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03090OsAffx.22492.1.S1_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.5.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.2.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03110Os.47623.1.A1_at11/1111+1118747..1122351GRAS family transcription factor containing protein, expressed
LOC_Os11g03120OsAffx.18646.1.S1_at11/1111+1125514..1126413hypothetical protein
LOC_Os11g03130OsAffx.19459.1.S1_at11/1111+1127569..1129824hypothetical protein
LOC_Os11g03140OsAffx.6978.1.S1_at11/1111+1130699..1131363hypothetical protein
LOC_Os11g03150OsAffx.18648.1.S1_at11/1111+1132890..1133960hypothetical protein
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006808biological_processregulation of nitrogen utilization
GO:0008356biological_processasymmetric cell division
GO:0009630biological_processgravitropism
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009938biological_processnegative regulation of gibberellic acid mediated signaling
GO:0010187biological_processnegative regulation of seed germination
GO:0010233biological_processphloem transport
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47623.1.A1_at--471--4892Chr12:1045996..1046020 (25 bp)
GCTTTTATTCTGTTCATGCTCCAGT
LOC_Os12g02870
Os.47623.1.A1_at--767--612Chr12:1046011..1046035 (25 bp)
ATGCTCCAGTTAACCATTCTGTCCA
LOC_Os12g02870
Os.47623.1.A1_at--538--6932Chr12:1046058..1046082 (25 bp)
GTAGTGCTTAATCCTTGCTGACATT
NONE
Os.47623.1.A1_at--733--6331Chr11:1121892..1121916 (25 bp)
GATGCAGTTCTTATCGTATGATCAT
LOC_Os11g03110
Os.47623.1.A1_at--413--3111Chr11:1121931..1121955 (25 bp)
AATATCTGGTGGTTAGTGAGCTCAA
LOC_Os11g03110
Os.47623.1.A1_at--278--6771Chr11:1122044..1122068 (25 bp)
GTTAATGTTCCTAATTTTCTCCAGA
LOC_Os11g03110
Os.47623.1.A1_at--824--3532Chr12:1046316..1046340 (25 bp)
CATGCCATCTAAATCCTGCTAATTC
NONE
Os.47623.1.A1_at--530--153Chr12:1046355..1046379 (25 bp)
ATTTGAAACCACTGACCTACACTGC
NONE
Os.47623.1.A1_at--845--5832Chr12:1046368..1046392 (25 bp)
GACCTACACTGCTCATTTAGACATT
NONE
Os.47623.1.A1_at--444--9752Chr12:1046441..1046464 (24 bp)
TAATTCACTTATTCCTGTATCCGGC
NONE
Os.47623.1.A1_at--70--9292Chr12:1046459..1046483 (25 bp)
TCCGGCATCTACTGGATATACATGG
NONE
Target Sequence 
GCTTTTATTCTGTTCATGCTCCAGTTAACCATTCTGTCCANTTTAGTTTATTTTGCAATTTTGTAGTGCTTAATCCTTGC
TGACATTGTTTTGGGGGAACACGCAAAAGGATCCTTACTGACATTAGAGATGCAGTTCTTATCGTATGATCATTGATCAC
AAAATGAAATATCTGGTGGTTAGTGAGCTCAATTAGATTGTTGATAGTGTAGCATTGTCAATGATCACCAAATAATATTG
TTAGTGTCCATCTACTATGAGAATTTACATGTACATTTAAGTTAATGTTCCTAATTTTCTCCAGAAAATGACTTAGGGTT
GATCTGAATGCCAAATTATCAGCAATGAACTAATGATGGGTAGCACATGAGTTGTGTACTAGAAAGTCAGGATGTTAGTG
GTTTTAATTCATGCCATCTAAATCCTGCTAATTCTTTTCTTCTGAAATATTTGAAACCACTGACCTACACTGCTCATTTA
GACATTGGTGTATCACTTTTCTAACATTTTTGCATTACAATAATCTTATTATGTAATTCACTTATTCCTGTATCCGGCAT
CTACTGGATATACATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47623.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis