Browse Element(s) Details


OsAffx.18646.1.S1_at

Description tigr:9639.m00219
TID=OsAffx.18646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0312011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03090OsAffx.22492.1.S1_x_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03090OsAffx.22492.1.S1_at1/1111+1098684..1104839retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.5.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.2.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03110Os.47623.1.A1_at11/1111+1118747..1122351GRAS family transcription factor containing protein, expressed
LOC_Os11g03120OsAffx.18646.1.S1_at11/1111+1125514..1126413hypothetical protein
LOC_Os11g03130OsAffx.19459.1.S1_at11/1111+1127569..1129824hypothetical protein
LOC_Os11g03140OsAffx.6978.1.S1_at11/1111+1130699..1131363hypothetical protein
LOC_Os11g03150OsAffx.18648.1.S1_at11/1111+1132890..1133960hypothetical protein
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18646.1.S1_at--1024--5971Chr11:1126131..1126369 (25 bp)
GAGAAAGACGGCTACCACGTCAAAA
LOC_Os11g03120
OsAffx.18646.1.S1_at--266--5911Chr11:1125905..1126068 (25 bp)
GAGCACAAGGGAGTTTTCAGTTTTA
LOC_Os11g03120
OsAffx.18646.1.S1_at--151--9631Chr11:1125889..1125913 (25 bp)
TCAGTTTTAACGCATGCCACATTTA
LOC_Os11g03120
OsAffx.18646.1.S1_at--124--2091Chr11:1125871..1125895 (25 bp)
ACATTTATCCTCATGGCTGTCATCA
LOC_Os11g03120
OsAffx.18646.1.S1_at--174--8471Chr11:1125858..1125882 (25 bp)
TGGCTGTCATCAGTGAACCATGGGT
LOC_Os11g03120
OsAffx.18646.1.S1_at--605--5431Chr11:1125844..1125868 (25 bp)
GAACCATGGGTGCATGTACACGCAT
LOC_Os11g03120
OsAffx.18646.1.S1_at--1072--4991Chr11:1125823..1125847 (25 bp)
GCATGGGTTAGCTTGAGTGCTCCAC
LOC_Os11g03120
OsAffx.18646.1.S1_at--673--10771Chr11:1125811..1125835 (25 bp)
TTGAGTGCTCCACTTCTGATGAAGT
LOC_Os11g03120
OsAffx.18646.1.S1_at--760--4991Chr11:1125759..1125783 (25 bp)
GCATGTGTGACTGCAAACCTTCACC
LOC_Os11g03120
OsAffx.18646.1.S1_at--237--2371Chr11:1125745..1125769 (25 bp)
AAACCTTCACCTTACGCAGTATTGT
LOC_Os11g03120
OsAffx.18646.1.S1_at--547--6771Chr11:1125723..1125746 (24 bp)
GTTAGCGAATTCCACAGGCACTGTT
LOC_Os11g03120
Target Sequence 
GAGAAAGACGGCTACCACGTCAAAAAAACCACCCTCAAAAACGATACCCGGTTTTACGGTTGAGGGATGCGATTTGACCG
AGGGCAAGAGCACAAGGGAGTTTTCAGTTTTAACGCATGCCACATTTATCCTCATGGCTGTCATCAGTGAACCATGGGTG
CATGTACACGCATGGGTTAGCTTGAGTGCTCCACTTCTGATGAAGTGTGAATTTGGTCAGAATCGTCAAAAATGCATGTG
TGACTGCAAACCTTCACCTTACGCAGTATTGTTAGCGAATTCCACAGGCACTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis