Browse Element(s) Details


OsAffx.19461.2.S1_at

Description tigr:9639.m00229
TID=OsAffx.19461.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0322011/11RNA recognition motif, putative
LOC_Os12g029702/11RNA recognition motif, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03210OsAffx.18651.1.S1_at11/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03210OsAffx.19460.1.S1_at2/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03220OsAffx.19461.2.S1_x_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.2.S1_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.1.S1_at6/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03240OsAffx.7468.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03240Os.11241.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03250NANA11+1189926..1193965retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19461.2.S1_at--524--7371Chr11:1168338..1168362 (25 bp)
GTGACTCTCCTAGCTACATGAATCA
LOC_Os11g03220
OsAffx.19461.2.S1_at--474--5712Chr11:1168336..1168360 (25 bp)
GACTCTCCTAGCTACATGAATCACA
LOC_Os11g03220
OsAffx.19461.2.S1_at--983--9492Chr11:1168333..1168357 (25 bp)
TCTCCTAGCTACATGAATCACAATA
LOC_Os11g03220
OsAffx.19461.2.S1_at--230--4852Chr12:1099196..1099220 (25 bp)
GCTACATGAATCACAATAGATTGCT
LOC_Os12g02970
OsAffx.19461.2.S1_at--844--1251Chr11:1168309..1168333 (25 bp)
AGATTGCTTTATTCTAGGGTGCCCT
LOC_Os11g03220
OsAffx.19461.2.S1_at--671--51Chr11:1168307..1168331 (25 bp)
ATTGCTTTATTCTAGGGTGCCCTTT
LOC_Os11g03220
OsAffx.19461.2.S1_at--586--10351Chr11:1168302..1168326 (25 bp)
TTTATTCTAGGGTGCCCTTTGACCT
LOC_Os11g03220
OsAffx.19461.2.S1_at--695--10571Chr11:1168298..1168322 (25 bp)
TTCTAGGGTGCCCTTTGACCTGCGA
LOC_Os11g03220
OsAffx.19461.2.S1_at--1139--10051Chr11:1168295..1168319 (25 bp)
TAGGGTGCCCTTTGACCTGCGACGA
LOC_Os11g03220
OsAffx.19461.2.S1_at--277--7711Chr11:1168293..1168317 (25 bp)
GGGTGCCCTTTGACCTGCGACGACA
LOC_Os11g03220
OsAffx.19461.2.S1_at--226--4272Chr12:1099155..1099174 (20 bp)
CCTGCGACGACACCAAATAGACAAT
LOC_Os12g02970
Target Sequence 
GTGACTCTCCTAGCTACATGAATCACAATAGATTGCTTTATTCTAGGGTGCCCTTTGACCTGCGACGACACCAAATAGAC
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19461.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis