Browse Element(s) Details


Os.47730.1.S1_x_at

Description gb:BX928842
DB_XREF= gi:41884011
DB_XREF=BX928842
CLONE=y774f09p3
TID=Os.47730.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.47730 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_187058.1 (A.thaliana) apyrase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g032305/11GDA1/CD39 family protein, expressed
LOC_Os11g032701/11GDA1/CD39 family protein
LOC_Os12g029801/11GDA1/CD39 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein
LOC_Os11g03190OsAffx.31557.1.S1_at11/1111+1157468..1159597hypothetical protein
LOC_Os11g03190Os.52945.1.S1_at3/1111+1157468..1159597hypothetical protein
LOC_Os11g03190OsAffx.31558.1.S1_x_at2/1111+1157468..1159597hypothetical protein
LOC_Os11g03200Os.52764.1.S1_x_at11/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03200Os.52764.1.S1_at10/1111+1161153..1163911pentatricopeptide, putative, expressed
LOC_Os11g03210OsAffx.18651.1.S1_at11/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03210OsAffx.19460.1.S1_at2/1111+1165520..1166164Glutathione S-transferase, N-terminal domain containing protein
LOC_Os11g03220OsAffx.19461.2.S1_x_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.2.S1_at11/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03220OsAffx.19461.1.S1_at6/1111+1166727..1169429RNA recognition motif, putative
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03240OsAffx.7468.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03240Os.11241.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03250NANA11+1189926..1193965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g03260NANA11+1195299..1196832hypothetical protein
LOC_Os11g03270OsAffx.30792.2.S1_at11/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.15801.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.47730.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47730.1.S1_x_at--995--3431NONE
CAGATTCTTGAAGCGCTATTTGCAC
NONE
Os.47730.1.S1_x_at--1111--111NONE
ATTCTTGAAGCGCTATTTGCACTAT
NONE
Os.47730.1.S1_x_at--161--10551NONE
TTCTTGAAGCGCTATTTGCACTATG
NONE
Os.47730.1.S1_x_at--530--1653Chr12:1108078..1108099 (22 bp)
AGCGCTATTTGCACTATGGCGGTTT
LOC_Os12g02980
Os.47730.1.S1_x_at--24--871Chr11:1176611..1176635 (25 bp)
ATGGCGGTTTTGCTTCTCGCGTGCA
LOC_Os11g03230
Os.47730.1.S1_x_at--488--8591Chr11:1176835..1176858 (24 bp)
TGGTAACTACACCTACAACGACAAA
LOC_Os11g03230
Os.47730.1.S1_x_at--979--9771Chr11:1176837..1176861 (25 bp)
TAACTACACCTACAACGACAAACAG
LOC_Os11g03230
Os.47730.1.S1_x_at--643--2591Chr11:1176850..1176874 (25 bp)
AACGACAAACAGTACGATGCAACGA
LOC_Os11g03230
Os.47730.1.S1_x_at--797--3011NONE
AATGCGGCCTGCGAAACCAAGGATT
NONE
Os.47730.1.S1_x_at--245--4711NONE
GCGGCCTGCGAAACCAAGGATTGCA
NONE
Os.47730.1.S1_x_at--1130--291NONE
ATAGCTTCCTATGTACGTCGTGATT
NONE
Target Sequence 
CAGATTCTTGAAGCGCTATTTGCACTATGGCGGTTTTGCTTCTCGCGTGCAGATCCTGGAGAGAAAGGATGGACCATTTA
GCAACTGCATGCTGCGCGGATTCAGTGGTAACTACACCTACAACGACAAACAGTACGATGCAACGACCGCACCACAAGGT
GCAGAGAAGAAGTAGTGAAGTTACTGAAGGTGAATGCGGCCTGCGAAACCAAGGATTGCAGCTTCAACGGCGTCTGGAAC
GGTGGTGGCGGAGCAGGGCAGGATGANCTCTACGTTGCGTCCGNCTTCTACTACATAGCTTCCTATGTACGTCGTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47730.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis