Browse Element(s) Details


OsAffx.30792.2.S1_at

Description tigr:9639.m00234
TID=OsAffx.30792.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=apyrase GS52
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0327011/11GDA1/CD39 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03230Os.11908.1.S1_s_at11/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.11718.1.S1_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.2.S1_x_at6/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03230Os.47730.1.S1_x_at5/1111+1174940..1178023GDA1/CD39 family protein, expressed
LOC_Os11g03240OsAffx.7468.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03240Os.11241.1.S1_at6/1111+1185210..1188669MATE efflux family protein, expressed
LOC_Os11g03250NANA11+1189926..1193965retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g03260NANA11+1195299..1196832hypothetical protein
LOC_Os11g03270OsAffx.30792.2.S1_at11/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.15801.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.47730.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03280OsAffx.667.1.S1_at7/1111+1209589..1213220transposon protein, putative, Mutator sub-class
LOC_Os11g03290Os.15801.1.S1_x_at10/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03290OsAffx.30792.1.S1_at5/1111+1221863..1225462GDA1/CD39 family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30792.2.S1_at--850--7091Chr11:1204649..1204673 (25 bp)
GTCACATCCAGCTTCTACTACATAG
LOC_Os11g03270
OsAffx.30792.2.S1_at--319--9891Chr11:1204664..1204868 (25 bp)
TACTACATAGCCTCCGGTATTGGGT
LOC_Os11g03270
OsAffx.30792.2.S1_at--13--3811Chr11:1204675..1204879 (25 bp)
CTCCGGTATTGGGTTCATCGACAGT
LOC_Os11g03270
OsAffx.30792.2.S1_at--576--1111Chr11:1204877..1204901 (25 bp)
AGTGAGGCGCCCAGTGCAAAGTCTA
LOC_Os11g03270
OsAffx.30792.2.S1_at--133--7351Chr11:1204890..1204914 (25 bp)
GTGCAAAGTCTACACCAGCAGCGTA
LOC_Os11g03270
OsAffx.30792.2.S1_at--223--5571Chr11:1204960..1204984 (25 bp)
GAAAGCAGCATACCCAATAGCTCGT
LOC_Os11g03270
OsAffx.30792.2.S1_at--56--3111Chr11:1204975..1204999 (25 bp)
AATAGCTCGTGATCACGCCTACTTA
LOC_Os11g03270
OsAffx.30792.2.S1_at--285--7971Chr11:1205005..1205029 (25 bp)
GGATCTCATCTATCAATACACCTTG
LOC_Os11g03270
OsAffx.30792.2.S1_at--107--1151Chr11:1205218..1205242 (25 bp)
AGTCCTACATAGAAGCAGCGTGGCC
LOC_Os11g03270
OsAffx.30792.2.S1_at--518--51Chr11:1206290..1206310 (21 bp)
ATTGAGGCAACTACTGGACCCAGAC
LOC_Os11g03270
OsAffx.30792.2.S1_at--292--9111Chr11:1207129..1207148 (20 bp)
TGCTGCGTGGATTCAATGGTCTGGA
LOC_Os11g03270
Target Sequence 
GTCACATCCAGCTTCTACTACATAGCCTCCGGTATTGGGTTCATCGACAGTGAGGCGCCCAGTGCAAAGTCTACACCAGC
AGCGTACAAGGCTGCATCAGAGAAGGTTTGTATACTGAGCATCGAAGAAGCGAAAGCAGCATACCCAATAGCTCGTGATC
ACGCCTACTTATGCATGGATCTCATCTATCAATACACCTTGCTTGTCGATGGCTTCGGTTTGGAAGCAACGAAGGAGATT
ACTCTGGTAGAGAAGGTGAAGCATGGAGAGTCCTACATAGAAGCAGCGTGGCCATTGGGCACTGCCATTGAGGCAACTAC
TGGACCCAGACTTATTGGAGATGAAAAGGCAAACCAGATTCTAGAAGCTATCCTGAAGAGAAAGAATGGACCATTTATCA
ATTGCATGCTGCGTGGATTCAATGGTCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30792.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis