Browse Element(s) Details


Os.15801.1.S1_x_at

Description gb:AK059453.1
DB_XREF= gi:32969471
TID=Os.15801.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15801 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-B11, full insert sequence.
FL= gb:AK059453.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0329010/11GDA1/CD39 family protein
LOC_Os12g030303/11hypothetical protein
LOC_Os11g032701/11GDA1/CD39 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03270OsAffx.30792.2.S1_at11/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.15801.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03270Os.47730.1.S1_x_at1/1111+1201741..1207799GDA1/CD39 family protein
LOC_Os11g03280OsAffx.667.1.S1_at7/1111+1209589..1213220transposon protein, putative, Mutator sub-class
LOC_Os11g03290Os.15801.1.S1_x_at10/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03290OsAffx.30792.1.S1_at5/1111+1221863..1225462GDA1/CD39 family protein
LOC_Os11g03300Os.35020.1.S1_at11/1111+1232929..1234980NAC domain transcription factor, putative, expressed
LOC_Os11g03310OsAffx.31559.2.S1_at11/1111+1240174..1241368No apical meristem protein
LOC_Os11g03320Os.25164.1.A1_at8/1111+1245705..1247228hypothetical protein
LOC_Os11g03330NANA11+1249529..1252981transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0009846biological_processpollen germination
GO:0004551molecular_functionnucleotide diphosphatase activity
GO:0005516molecular_functioncalmodulin binding
GO:0016787molecular_functionhydrolase activity
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15801.1.S1_x_at--841--8552Chr12:1132223..1132247 (25 bp)
TGGTGAAGGCACTCAACCTGGACGC
LOC_Os12g03030
Os.15801.1.S1_x_at--163--972Chr12:1132310..1132334 (25 bp)
AGGACGAGCTCTACGTTGCGACCAG
LOC_Os12g03030
Os.15801.1.S1_x_at--101--1212Chr12:1132333..1132356 (24 bp)
AGTTTCTACTACATGGCCTCGGATA
LOC_Os12g03030
Os.15801.1.S1_x_at--355--4471NONE
GCCTCGGATATTGGGCTCATCGATA
NONE
Os.15801.1.S1_x_at--761--1631Chr11:1225049..1225073 (25 bp)
AGCGAGGCTCCTAGTGCTAAGTCCA
LOC_Os11g03290
Os.15801.1.S1_x_at--222--5572Chr11:1225132..1225156 (25 bp)
GAAAGCAGCATACCCCAGAGCTTGT
LOC_Os11g03290
Os.15801.1.S1_x_at--8--1371Chr11:1225148..1225172 (25 bp)
AGAGCTTGTGACCATGCTTATCTAT
LOC_Os11g03290
Os.15801.1.S1_x_at--686--4891Chr11:1225163..1225187 (25 bp)
GCTTATCTATGCATGGACCTCGTTT
LOC_Os11g03290
Os.15801.1.S1_x_at--709--3092Chr11:1225191..1225215 (25 bp)
AATACACCTTGCTTGTCGATGGCTT
LOC_Os11g03290
Os.15801.1.S1_x_at--299--7011Chr11:1225384..1225408 (25 bp)
GTACTACATCGAAGCGGCGTGGCCA
LOC_Os11g03290
Os.15801.1.S1_x_at--1095--8871Chr11:1225423..1225447 (25 bp)
TGAGGCTGTCTCACCCAAAAAGAAG
LOC_Os11g03290
Target Sequence 
TGGTGAAGGCACTCAACCTGGACGCGCCTTGCGAAACCAACAACTGCAGCTTCAACGGAGTGTGGAACGGCGGCGGTGGC
GCTGGGCAGGACGAGCTCTACGTTGCGACCAGTTTCTACTACATGGCCTCGGATATTGGGCTCATCGATAGCGAGGCTCC
TAGTGCTAAGTCCACACCAGCAGCATACAAGGTTGCTGCAGAAAAAGTTTGCAGTCTGAGTGTTGAAGAAGCGAAAGCAG
CATACCCCAGAGCTTGTGACCATGCTTATCTATGCATGGACCTCGTTTACCAATACACCTTGCTTGTCGATGGCTTTGGT
TTGGAGGCAACGAAGGAGATGACGCTGGTAGAGAAGGTGAAGCATGGAGAGTACTACATCGAAGCGGCGTGGCCATTGGG
CACCGCCATTGAGGCTGTCTCACCCAAAAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15801.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis