Browse Element(s) Details


OsAffx.31611.1.S1_s_at

Description tigr:9640.m00539
TID=OsAffx.31611.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0619011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06160NANA12+2910704..2911579uncharacterized plant-specific domain TIGR01568 family protein, expressed
LOC_Os12g06170OsAffx.19518.1.S1_at10/1112+2919443..2921117hypothetical protein
LOC_Os12g06180OsAffx.7498.1.S1_at11/1112+2930759..2933408HVA22-like protein j, putative, expressed
LOC_Os12g06190OsAffx.31611.1.S1_s_at11/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.19151.1.S1_at1/1112+2933608..2934619expressed protein
LOC_Os12g06190Os.6844.1.S1_x_at1/1112+2933608..2934619expressed protein
LOC_Os12g06200Os.424.1.S1_at11/1112+2938696..2944050Transcription factor E2F/dimerisation partner family protein, expressed
LOC_Os12g06210OsAffx.19519.1.S1_at11/1112+2946868..2947542Harpin-induced protein 1 containing protein
LOC_Os12g06220Os.5354.1.S1_at11/1112+2949703..2950593Harpin-induced protein 1 containing protein, expressed
LOC_Os12g06230OsAffx.7499.1.S1_at11/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.12219.1.A1_at10/1112+2952126..2965407hypothetical protein
LOC_Os12g06230OsAffx.7578.1.S1_at5/1112+2952126..2965407hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31611.1.S1_s_at--326--3311Chr12:2933962..2933986 (25 bp)
CACACTTGATTATTCCTCTCCCATT
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--1127--10771Chr12:2933957..2933981 (25 bp)
TTGATTATTCCTCTCCCATTCTTCT
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--272--10591Chr12:2933936..2933960 (25 bp)
TTCTCTCATTTTCTAGTCTATGTGT
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--979--3751Chr12:2933932..2933956 (25 bp)
CTCATTTTCTAGTCTATGTGTGATT
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--783--8651Chr12:2933916..2933940 (25 bp)
TGTGTGATTAGACTATTTTTCTTTC
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--276--10271Chr12:2933870..2933894 (25 bp)
TTTGCTTGCGTTGGAATTTTTGTAA
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--681--171Chr12:2933855..2933879 (25 bp)
ATTTTTGTAAATAACTTGCTAGGAT
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--856--2511Chr12:2933843..2933867 (25 bp)
AACTTGCTAGGATTAGTCTCAAAGA
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--424--4271Chr12:2933755..2933779 (25 bp)
CCTGAGCTCAACTTAATATTTCTTG
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--1014--7391Chr12:2933705..2933729 (25 bp)
GTGATGAGCTCATGATTGATCCAAT
LOC_Os12g06190
OsAffx.31611.1.S1_s_at--330--5911Chr12:2933700..2933724 (25 bp)
GAGCTCATGATTGATCCAATAATGT
LOC_Os12g06190
Target Sequence 
CACACTTGATTATTCCTCTCCCATTCTTCTCTCATTTTCTAGTCTATGTGTGATTAGACTATTTTTCTTTCTTAATTACA
AACTTTAGAGGATTTGCTTGCGTTGGAATTTTTGTAAATAACTTGCTAGGATTAGTCTCAAAGAGGAGGAGATGATAGCA
ACAAAGAGAGATGTTTGATTGCATGGTAACAGAAGCAGATTAGTTAGCCTGAGCTCAACTTAATATTTCTTGATTTTTTT
TCTCTCTTTTTTTTTGAGTGATGAGCTCATGATTGATCCAATAATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31611.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis