Browse Element(s) Details


OsAffx.31619.1.S1_at

Description tigr:9640.m00579
TID=OsAffx.31619.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to cyclic nucleotide and calmodulin-regulated ion channel-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0657011/11Cyclic nucleotide-gated ion channel 14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06530Os.46012.2.S1_x_at9/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.46012.3.S1_x_at6/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06530Os.27088.1.A1_x_at5/1112+3158983..3164652retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06540OsAffx.19522.1.S1_at11/1112+3169550..3171222GRAS family transcription factor containing protein
LOC_Os12g06550Os.55421.1.S1_at11/1112+3174209..3177222expressed protein
LOC_Os12g06560OsAffx.31618.1.S1_at11/1112+3178993..3183721expressed protein
LOC_Os12g06570OsAffx.31619.1.S1_at11/1112+3185850..3189005Cyclic nucleotide-gated ion channel 14, putative, expressed
LOC_Os12g06580NANA12+3191370..3193178retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06590NANA12+3194787..3195905retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06600NANA12+3197665..3199653retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g06610Os.11568.2.S1_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06610Os.11568.1.A1_x_at11/1112+3200635..3206795Uncharacterised protein family containing protein, expressed
LOC_Os12g06620Os.27815.1.S1_at11/1112+3207503..3210748PBS lyase HEAT-like repeat family protein, expressed
LOC_Os12g06630Os.12718.1.S1_at11/1112+3211531..3216695Tubby protein, putative, expressed
LOC_Os12g06630Os.52835.2.S1_at1/1112+3211531..3216695Tubby protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005216molecular_functionion channel activity
GO:0005261molecular_functioncation channel activity
GO:0005516molecular_functioncalmodulin binding
GO:0030551molecular_functioncyclic nucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31619.1.S1_at--794--6991Chr12:3186285..3186309 (25 bp)
GTACGTCGCCAACCAGTTCAAGCGG
LOC_Os12g06570
OsAffx.31619.1.S1_at--361--2151Chr12:3186256..3186280 (25 bp)
ACAGCAAGCGGCTGCAGCACGCGTT
LOC_Os12g06570
OsAffx.31619.1.S1_at--184--9031Chr12:3186244..3186268 (25 bp)
TGCAGCACGCGTTCCGGTACTACTC
LOC_Os12g06570
OsAffx.31619.1.S1_at--842--7831Chr12:3186229..3186253 (25 bp)
GGTACTACTCCCACCAATGGCGGAG
LOC_Os12g06570
OsAffx.31619.1.S1_at--338--9911Chr12:3186224..3186248 (25 bp)
TACTCCCACCAATGGCGGAGCTGGG
LOC_Os12g06570
OsAffx.31619.1.S1_at--6--6191Chr12:3186128..3186152 (25 bp)
GAGGAGCTCTACTACATGCAGGGCC
LOC_Os12g06570
OsAffx.31619.1.S1_at--817--9531Chr12:3186121..3186145 (25 bp)
TCTACTACATGCAGGGCCAGGGCGG
LOC_Os12g06570
OsAffx.31619.1.S1_at--10--4571Chr12:3185986..3186010 (25 bp)
GCGCGACGTTCCTGGCGTCCAAGTT
LOC_Os12g06570
OsAffx.31619.1.S1_at--683--7271Chr12:3185970..3185994 (25 bp)
GTCCAAGTTCGCCAAGAACACCAAG
LOC_Os12g06570
OsAffx.31619.1.S1_at--935--8011Chr12:3185910..3185934 (25 bp)
GGAGGACGTGTCCAGCATCAAGTTC
LOC_Os12g06570
OsAffx.31619.1.S1_at--87--1911Chr12:3185905..3185929 (25 bp)
ACGTGTCCAGCATCAAGTTCCCCAA
LOC_Os12g06570
Target Sequence 
GTACGTCGCCAACCAGTTCAAGCGGCTGCACAGCAAGCGGCTGCAGCACGCGTTCCGGTACTACTCCCACCAATGGCGGA
GCTGGGGCGCGTGCTTCGTGCAGGGCGCGTGGCGCCGCTACAAGAAGCGCAAGCTCGCCAGGGAGCTCAGCAAGCAGGAG
GAGCTCTACTACATGCAGGGCCAGGGCGGCGACGACGGCGACGGGCACGACGACAGCGACAGCGCGCCGCTGCTCGGTGC
CGGCGTCGGCGCCGGCGGAGACCACAGGGACGGCGCCGCCGCCGGCGCGGCGCACCTCGGCGCGACGTTCCTGGCGTCCA
AGTTCGCCAAGAACACCAAGAAGAGCGCCGCGGCGCACCACGGCAAGGCGAGGATGGAGGACGTGTCCAGCATCAAGTTC
CCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis