Browse Element(s) Details


OsAffx.31656.2.S1_at

Description tigr:9634.m03963
TID=OsAffx.31656.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4121010/11hypothetical protein
LOC_Os12g025603/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41190NANA6+24650254..24651537retrotransposon protein, putative, unclassified
LOC_Os06g41200OsAffx.20275.1.S1_at1/116+24652426..24655124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41210OsAffx.31656.2.S1_at10/116+24667966..24669355hypothetical protein
LOC_Os06g41220OsAffx.5073.1.S1_at11/116+24671393..24673590hypothetical protein
LOC_Os06g41229NANA6+24678225..24678457NA
LOC_Os06g41240Os.11881.1.S1_at11/116+24679292..24680232expressed protein
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31656.2.S1_at--515--10131Chr06:24668999..24669019 (21 bp)
TATACCTGGTCCTGGGCCAAGAGAA
LOC_Os06g41210
OsAffx.31656.2.S1_at--904--291Chr06:24669000..24669078 (25 bp)
ATACCTGGTCCTGGGCCAAGAGAAG
LOC_Os06g41210
OsAffx.31656.2.S1_at--247--3911Chr06:24669004..24669082 (25 bp)
CTGGTCCTGGGCCAAGAGAAGCCAT
LOC_Os06g41210
OsAffx.31656.2.S1_at--493--8591Chr06:24669005..24669083 (25 bp)
TGGTCCTGGGCCAAGAGAAGCCATG
LOC_Os06g41210
OsAffx.31656.2.S1_at--699--2771Chr06:24669072..24669095 (24 bp)
AAGAGAAGCCATGTGAAGTGTTCCT
LOC_Os06g41210
OsAffx.31656.2.S1_at--1017--2652Chr12:882098..882123 (25 bp)
AAGCCATGTGAAGTGTTCCTGGAGT
LOC_Os12g02560
OsAffx.31656.2.S1_at--210--4432Chr12:882100..882125 (25 bp)
GCCATGTGAAGTGTTCCTGGAGTTT
LOC_Os12g02560
OsAffx.31656.2.S1_at--531--10851Chr06:24669101..24669125 (25 bp)
TTGGTGGATATAGGCAAAGTGATAT
LOC_Os06g41210
OsAffx.31656.2.S1_at--825--8232Chr12:882136..882160 (25 bp)
GGCAAAGTGATATTCTTTTAAGAAA
LOC_Os12g02560
OsAffx.31656.2.S1_at--926--5511Chr06:24669134..24669321 (25 bp)
GAAAATCAAAGACATGGCGCTATAA
LOC_Os06g41210
OsAffx.31656.2.S1_at--104--3091NONE
AATCAAAGACATGGCGCTATAAGCT
NONE
Target Sequence 
TATACCTGGTCCTGGGCCAAGAGAAGCCATGTGAAGTGTTCCTGGAGTTTGGTGGATATAGGCAAAGTGATATTCTTTTA
AGAAAATCAAAGACATGGCGCTATAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31656.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis