Browse Element(s) Details


Os.11881.1.S1_at

Description gb:AK072464.1
DB_XREF= gi:32982487
TID=Os.11881.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11881 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023120F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023120F04, full insert sequence.
FL= gb:AK072464.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4124011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41200OsAffx.20275.1.S1_at1/116+24652426..24655124retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g41210OsAffx.31656.2.S1_at10/116+24667966..24669355hypothetical protein
LOC_Os06g41220OsAffx.5073.1.S1_at11/116+24671393..24673590hypothetical protein
LOC_Os06g41229NANA6+24678225..24678457NA
LOC_Os06g41240Os.11881.1.S1_at11/116+24679292..24680232expressed protein
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein
LOC_Os06g41280OsAffx.15873.1.S1_at11/116+24704666..24704905hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11881.1.S1_at--16--4532Chr06:24679533..24679557 (25 bp)
GCCGCCGGATTCTAGGTTTTTCATT
LOC_Os06g41240
Os.11881.1.S1_at--206--10791Chr06:24679481..24679505 (25 bp)
TTGTTTTTACGTACGGATGATATAA
LOC_Os06g41240
Os.11881.1.S1_at--821--711Chr06:24679465..24679489 (25 bp)
ATGATATAAGCATCTGCACGCGGAA
LOC_Os06g41240
Os.11881.1.S1_at--216--3551Chr06:24679455..24679479 (25 bp)
CATCTGCACGCGGAAATCGTGATTT
LOC_Os06g41240
Os.11881.1.S1_at--1048--491Chr06:24679440..24679464 (25 bp)
ATCGTGATTTTTGCATACCCCTGGG
LOC_Os06g41240
Os.11881.1.S1_at--29--10271Chr06:24679431..24679455 (25 bp)
TTTGCATACCCCTGGGTGCGTGCGG
LOC_Os06g41240
Os.11881.1.S1_at--264--4239Chr12:22829540..22829674 (24 bp)
CCGCACGCGAAAATCTTTCTCGTAG
NONE
Os.11881.1.S1_at--1109--431Chr06:24679385..24679409 (25 bp)
ATCTTTCTCGTAGTAGTGGTTCTGA
LOC_Os06g41240
Os.11881.1.S1_at--418--3791Chr06:24679379..24679403 (25 bp)
CTCGTAGTAGTGGTTCTGATAGCAA
LOC_Os06g41240
Os.11881.1.S1_at--663--10271Chr06:24679345..24679369 (25 bp)
TTTCCTTTTGAGTTTTGCCCAACAG
LOC_Os06g41240
Os.11881.1.S1_at--587--6071Chr06:24679336..24679360 (25 bp)
GAGTTTTGCCCAACAGATATTTGAA
LOC_Os06g41240
Target Sequence 
GCCGCCGGATTCTAGGTTTTTCATTTGTTTTGAAATTTTTTTTTTCCGGATTTTTGTTTTTACGTACGGATGATATAAGC
ATCTGCACGCGGAAATCGTGATTTTTGCATACCCCTGGGTGCGTGCGGGTCGCTCACCCGCACGCGAAAATCTTTCTCGT
AGTAGTGGTTCTGATAGCAAATAGATATTTTTCCTTTTGAGTTTTGCCCAACAGATATTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11881.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis