Browse Element(s) Details


OsAffx.15873.1.S1_at

Description tigr:9634.m03970
TID=OsAffx.15873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4128011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41240Os.11881.1.S1_at11/116+24679292..24680232expressed protein
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein
LOC_Os06g41280OsAffx.15873.1.S1_at11/116+24704666..24704905hypothetical protein
LOC_Os06g41290Os.55346.1.S1_at11/116+24705810..24706544expressed protein
LOC_Os06g41300OsAffx.28039.2.S1_x_at11/116+24711512..24711883hypothetical protein
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15873.1.S1_at--476--5091Chr06:24704707..24704731 (25 bp)
GCACCGGCCGGGAACATGTGTCCAA
LOC_Os06g41280
OsAffx.15873.1.S1_at--796--2111Chr06:24704720..24704744 (25 bp)
ACATGTGTCCAAGTTAGTGTCATAC
LOC_Os06g41280
OsAffx.15873.1.S1_at--54--491Chr06:24704746..24704770 (25 bp)
ATCTGATCGTGATGTCAACAACAAA
LOC_Os06g41280
OsAffx.15873.1.S1_at--194--2191Chr06:24704763..24704787 (25 bp)
ACAACAAAGTTGGAACAGACCAGAT
LOC_Os06g41280
OsAffx.15873.1.S1_at--9--2151Chr06:24704777..24704801 (25 bp)
ACAGACCAGATAACAGCGGCTCACA
LOC_Os06g41280
OsAffx.15873.1.S1_at--1031--9811Chr06:24704787..24704811 (25 bp)
TAACAGCGGCTCACAGATGCGCTAC
LOC_Os06g41280
OsAffx.15873.1.S1_at--886--4851Chr06:24704807..24704831 (25 bp)
GCTACCCTCCTTGCAAAAGATGCGG
LOC_Os06g41280
OsAffx.15873.1.S1_at--811--2431Chr06:24704821..24704845 (25 bp)
AAAAGATGCGGTGGCAGTCCTACTC
LOC_Os06g41280
OsAffx.15873.1.S1_at--897--7531Chr06:24704831..24704855 (25 bp)
GTGGCAGTCCTACTCCGAATCAGAG
LOC_Os06g41280
OsAffx.15873.1.S1_at--144--7271Chr06:24704837..24704861 (25 bp)
GTCCTACTCCGAATCAGAGGCGATG
LOC_Os06g41280
OsAffx.15873.1.S1_at--316--3431Chr06:24704851..24704875 (25 bp)
CAGAGGCGATGTGCTCAAGTTGCTT
LOC_Os06g41280
Target Sequence 
GCACCGGCCGGGAACATGTGTCCAAGTTAGTGTCATACAATCTGATCGTGATGTCAACAACAAAGTTGGAACAGACCAGA
TAACAGCGGCTCACAGATGCGCTACCCTCCTTGCAAAAGATGCGGTGGCAGTCCTACTCCGAATCAGAGGCGATGTGCTC
AAGTTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis