Browse Element(s) Details


OsAffx.28040.1.S1_at

Description tigr:9634.m03973
TID=OsAffx.28040.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4131011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein
LOC_Os06g41280OsAffx.15873.1.S1_at11/116+24704666..24704905hypothetical protein
LOC_Os06g41290Os.55346.1.S1_at11/116+24705810..24706544expressed protein
LOC_Os06g41300OsAffx.28039.2.S1_x_at11/116+24711512..24711883hypothetical protein
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein
LOC_Os06g41320OsAffx.15875.1.S1_at11/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41320OsAffx.23566.1.S1_at1/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41330OsAffx.5075.1.S1_x_at11/116+24739377..24740424hypothetical protein
LOC_Os06g41330OsAffx.5075.1.S1_at10/116+24739377..24740424hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28040.1.S1_at--381--8411Chr06:24714922..24714946 (25 bp)
GGCCCAAGTGGCAGAACTCAGGAAA
LOC_Os06g41310
OsAffx.28040.1.S1_at--79--531Chr06:24714988..24715012 (25 bp)
ATCGAGCTGCAGTAGCAAGATCTAG
LOC_Os06g41310
OsAffx.28040.1.S1_at--405--451Chr06:24715007..24715031 (25 bp)
ATCTAGCGGCGGACCTAGGGCAGCA
LOC_Os06g41310
OsAffx.28040.1.S1_at--780--471Chr06:24715232..24715256 (25 bp)
ATCTGCTGCCACTGGGCCTTGGGAG
LOC_Os06g41310
OsAffx.28040.1.S1_at--543--10771Chr06:24715250..24715274 (25 bp)
TTGGGAGCATGGATCCGTCACCACA
LOC_Os06g41310
OsAffx.28040.1.S1_at--683--8551Chr06:24715259..24715283 (25 bp)
TGGATCCGTCACCACAAGGCCTTGG
LOC_Os06g41310
OsAffx.28040.1.S1_at--535--8411Chr06:24715276..24715300 (25 bp)
GGCCTTGGAAAGCAATACCTCGTCT
LOC_Os06g41310
OsAffx.28040.1.S1_at--509--2731Chr06:24715285..24715309 (25 bp)
AAGCAATACCTCGTCTTCGTGGGCA
LOC_Os06g41310
OsAffx.28040.1.S1_at--133--7491Chr06:24715303..24715327 (25 bp)
GTGGGCACTTAACTGTGCAGCCTAA
LOC_Os06g41310
OsAffx.28040.1.S1_at--55--8291Chr06:24715346..24715370 (25 bp)
GGCTCTTAGGGTGGACACTTGCGAA
LOC_Os06g41310
OsAffx.28040.1.S1_at--1118--7711Chr06:24715354..24715378 (25 bp)
GGGTGGACACTTGCGAAAATCGATT
LOC_Os06g41310
Target Sequence 
GGCCCAAGTGGCAGAACTCAGGAAATGGCACAGCCAAGGCTACAATGGACAGATCTGGAGGTGGAGATCGAGCTGCAGTA
GCAAGATCTAGCGGCGGACCTAGGGCAGCAACGGGGCCCAGTGGTGTCGAGGGCGGCGGATCTGCTGCCACTGGGCCTTG
GGAGCATGGATCCGTCACCACAAGGCCTTGGAAAGCAATACCTCGTCTTCGTGGGCACTTAACTGTGCAGCCTAAAAAAG
GAGATTTTCGTGGGGCTCTTAGGGTGGACACTTGCGAAAATCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28040.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis