Browse Element(s) Details


OsAffx.28039.2.S1_x_at

Description tigr:9634.m03972
TID=OsAffx.28039.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4130011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein
LOC_Os06g41280OsAffx.15873.1.S1_at11/116+24704666..24704905hypothetical protein
LOC_Os06g41290Os.55346.1.S1_at11/116+24705810..24706544expressed protein
LOC_Os06g41300OsAffx.28039.2.S1_x_at11/116+24711512..24711883hypothetical protein
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein
LOC_Os06g41320OsAffx.15875.1.S1_at11/116+24732921..24735919transposon protein, putative, unclassified
LOC_Os06g41320OsAffx.23566.1.S1_at1/116+24732921..24735919transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28039.2.S1_x_at--950--1511Chr06:24711544..24711568 (25 bp)
AGCAGATGCTGGCACTCAACGCCGC
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--187--4171Chr06:24711566..24711590 (25 bp)
CGCCTGTGCCGTTCTGCGAGGCGCT
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--870--9412Chr06:24711653..24711677 (25 bp)
TCGTCGACAGGCAGTGGTACGCGCC
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--1094--7212Chr06:24711655..24711679 (25 bp)
GTCGACAGGCAGTGGTACGCGCCAC
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--86--5671Chr06:24711658..24711682 (25 bp)
GACAGGCAGTGGTACGCGCCACCAT
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--480--3491Chr06:24711660..24711684 (25 bp)
CAGGCAGTGGTACGCGCCACCATGC
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--379--1852Chr06:24711738..24711762 (25 bp)
ACGAAATCCGTGAGGGCGTTGGCAA
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--1069--1891Chr06:24711777..24711801 (25 bp)
ACGTGCCGCTGGACACCGGTCGCTG
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--433--5551Chr06:24711788..24711812 (25 bp)
GACACCGGTCGCTGGGCGGCAAAGG
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--643--8212Chr06:24711805..24711829 (25 bp)
GGCAAAGGCGAGTTCTTCCCGGGCA
LOC_Os06g41300
OsAffx.28039.2.S1_x_at--274--1791Chr06:24711829..24711853 (25 bp)
ACCGTGCGCCGGAATGCTGCCGTGC
LOC_Os06g41300
Target Sequence 
AGCAGATGCTGGCACTCAACGCCGCCTGTGCCGTTCTGCGAGGCGCTCCGGTGGGTGGTGCGGCGGCGCGGCGGCCAGAC
CGGGGGGTGGAGCGAGGTGGCGTGCGCGGTCGTCGACAGGCAGTGGTACGCGCCACCATGCTCCACTGCATGCTCAGCTA
CTCGCGCCTCCGCTCCCGGGCACCGGCACCATCAACGAAATCCGTGAGGGCGTTGGCAAGCACTACAGCGTGAACGTGCC
GCTGGACACCGGTCGCTGGGCGGCAAAGGCGAGTTCTTCCCGGGCACCGTGCGCCGGAATGCTGCCGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28039.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis