Browse Element(s) Details


Os.55346.1.S1_at

Description gb:AK107912.1
DB_XREF= gi:32993121
TID=Os.55346.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55346 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-G07, full insert sequence.
FL= gb:AK107912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4129011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein
LOC_Os06g41280OsAffx.15873.1.S1_at11/116+24704666..24704905hypothetical protein
LOC_Os06g41290Os.55346.1.S1_at11/116+24705810..24706544expressed protein
LOC_Os06g41300OsAffx.28039.2.S1_x_at11/116+24711512..24711883hypothetical protein
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55346.1.S1_at--103--8431Chr06:24706093..24706117 (25 bp)
GGCCTCCCTTAGGTCGGATCTAGGA
LOC_Os06g41290
Os.55346.1.S1_at--699--6411Chr06:24706109..24706133 (25 bp)
GATCTAGGAGAAACGGGAACCGCCA
LOC_Os06g41290
Os.55346.1.S1_at--974--5893Chr08:14259145..14259221 (25 bp)
GAGCTGAGAGCTGAGACTTAGAAAA
NONE
Os.55346.1.S1_at--543--2411Chr06:24706368..24706392 (25 bp)
AAAAATTCTTGCTTCCATGTCGTGT
LOC_Os06g41290
Os.55346.1.S1_at--579--4912Chr06:24706378..24706402 (25 bp)
GCTTCCATGTCGTGTCTATTTATAT
LOC_Os06g41290
Os.55346.1.S1_at--1093--10371Chr06:24706397..24706421 (25 bp)
TTATATTCACGCCAATTTCCGCAGG
LOC_Os06g41290
Os.55346.1.S1_at--137--4391Chr06:24706407..24706431 (25 bp)
GCCAATTTCCGCAGGTGGATCACAT
LOC_Os06g41290
Os.55346.1.S1_at--638--2911Chr06:24706456..24706480 (25 bp)
AAGGATATTTTTCCGCCTGTGTGGA
LOC_Os06g41290
Os.55346.1.S1_at--501--7511Chr06:24706476..24706500 (25 bp)
GTGGATATAAATTTCCGCACGGTAT
LOC_Os06g41290
Os.55346.1.S1_at--1151--4211Chr06:24706490..24706514 (25 bp)
CCGCACGGTATTTTCGCAGGATATA
LOC_Os06g41290
Os.55346.1.S1_at--882--3091Chr06:24706517..24706541 (25 bp)
AATACCATTTCCATCGTGTCTATAG
LOC_Os06g41290
Target Sequence 
GGCCTCCCTTAGGTCGGATCTAGGAGAAACGGGAACCGCCACCGCCGCCACCTCCAGGGGTAGCCACCGCCACCCCTCCT
CCCCCTCCCCCCTTCGGCCGGATCTAGGAGGGAGGAGAAGGGAGCCGTGCCGGGTGTGGATGCCACCGTCCCCGAGCGTC
GCCGTCGCCGACCCCATGCCTCGCCGTTGCCGCTGCCGACCCCGCCACCACCGGTCGCTGATGGAGCTAAGGAAGAGAGG
GTAGAGGGAGAGGAGAGCTGAGAGCTGAGACTTAGAAAAATTCTTGCTTCCATGTCGTGTCTATTTATATTCACGCCAAT
TTCCGCAGGTGGATCACATAAGATTAACAAAGGGTTTTTTTTCAAGGATATTTTTCCGCCTGTGTGGATATAAATTTCCG
CACGGTATTTTCGCAGGATATAAAAATACCATTTCCATCGTGTCTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55346.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis