Browse Element(s) Details


OsAffx.5074.1.S1_at

Description tigr:9634.m03968
TID=OsAffx.5074.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4126011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g41210OsAffx.31656.2.S1_at10/116+24667966..24669355hypothetical protein
LOC_Os06g41220OsAffx.5073.1.S1_at11/116+24671393..24673590hypothetical protein
LOC_Os06g41229NANA6+24678225..24678457NA
LOC_Os06g41240Os.11881.1.S1_at11/116+24679292..24680232expressed protein
LOC_Os06g41250OsAffx.7362.1.S1_x_at1/116+24683276..24689295transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g41260OsAffx.5074.1.S1_at11/116+24691920..24692644hypothetical protein
LOC_Os06g41270NANA6+24694685..24695080hypothetical protein
LOC_Os06g41280OsAffx.15873.1.S1_at11/116+24704666..24704905hypothetical protein
LOC_Os06g41290Os.55346.1.S1_at11/116+24705810..24706544expressed protein
LOC_Os06g41300OsAffx.28039.2.S1_x_at11/116+24711512..24711883hypothetical protein
LOC_Os06g41310OsAffx.28040.1.S1_at11/116+24714861..24715433hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5074.1.S1_at--1044--651Chr06:24692589..24692613 (25 bp)
ATGAAAGCGCGGTACCGAGTCCACT
LOC_Os06g41260
OsAffx.5074.1.S1_at--1120--5551Chr06:24692587..24692611 (25 bp)
GAAAGCGCGGTACCGAGTCCACTCT
LOC_Os06g41260
OsAffx.5074.1.S1_at--472--10513Chr07:4146270..4146289 (20 bp)
TTCAGTCCCGTTGCGAACCTCGGTA
NONE
OsAffx.5074.1.S1_at--755--413Chr07:4146270..4146292 (23 bp)
AGTCCCGTTGCGAACCTCGGTATCG
NONE
OsAffx.5074.1.S1_at--530--10692Chr06:24692232..24692256 (25 bp)
TTGCGAACCTCGGTATCGCGCTTTC
LOC_Os06g41260
OsAffx.5074.1.S1_at--665--4593Chr10:14896204..14896226 (23 bp)
GCGAACCTCGGTATCGCGCTTTCCT
NONE
OsAffx.5074.1.S1_at--928--10291Chr06:24692211..24692235 (25 bp)
TTTCCTCCCGCGATTTCGATAGTAT
LOC_Os06g41260
OsAffx.5074.1.S1_at--993--9251Chr06:24692209..24692233 (25 bp)
TCCTCCCGCGATTTCGATAGTATAT
LOC_Os06g41260
OsAffx.5074.1.S1_at--796--4191Chr06:24692205..24692229 (25 bp)
CCCGCGATTTCGATAGTATATTTGT
LOC_Os06g41260
OsAffx.5074.1.S1_at--350--4053Chr12:27066237..27066480 (25 bp)
CGATTTCGATAGTATATTTGTGCAA
NONE
OsAffx.5074.1.S1_at--1148--6871Chr06:24692190..24692214 (25 bp)
GTATATTTGTGCAAATCGATCGGCA
LOC_Os06g41260
Target Sequence 
ATGAAAGCGCGGTACCGAGTCCACTCTCGCGCTTCAGTCCCGTTGCGAACCTCGGTATCGCGCTTTCCTCCCGCGATTTC
GATAGTATATTTGTGCAAATCGATCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5074.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis