Browse Element(s) Details


OsAffx.31678.2.S1_at

Description tigr:9640.m00964
TID=OsAffx.31678.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1027011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10270OsAffx.31678.2.S1_at11/1112+5431561..5433649hAT family dimerisation domain containing protein
LOC_Os12g10280OsAffx.7548.1.S1_at11/1112+5434714..5438021Major intrinsic protein, expressed
LOC_Os12g10290NANA12+5439409..5439792hypothetical protein
LOC_Os12g10300NANA12+5441629..5441876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10310OsAffx.10633.1.S1_at3/1112+5442275..5446785retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10320Os.25559.1.S1_at11/1112+5454291..5455810uncharacterized plant-specific domain TIGR01627 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31678.2.S1_at--389--3011Chr12:5432830..5432854 (25 bp)
AATGAATCTAATGGCTTTCCTGGCG
LOC_Os12g10270
OsAffx.31678.2.S1_at--776--2951Chr12:5432839..5432863 (25 bp)
AATGGCTTTCCTGGCGCCAAAGATG
LOC_Os12g10270
OsAffx.31678.2.S1_at--739--6231Chr12:5432860..5432884 (25 bp)
GATGGCAACTATGTTGCAGACGTTC
LOC_Os12g10270
OsAffx.31678.2.S1_at--666--911Chr12:5433017..5433041 (25 bp)
AGGCTGCAGCCGATTATATCTCTAA
LOC_Os12g10270
OsAffx.31678.2.S1_at--67--731Chr12:5433077..5433101 (25 bp)
ATGTTGAAGATCATGGTAGTGCCAT
LOC_Os12g10270
OsAffx.31678.2.S1_at--748--791Chr12:5433104..5433128 (25 bp)
ATGTGGTGGCCGTTAGCAGCACTGA
LOC_Os12g10270
OsAffx.31678.2.S1_at--158--10071Chr12:5433206..5433230 (25 bp)
TAGTCCATGATCCAACATCAGGTTT
LOC_Os12g10270
OsAffx.31678.2.S1_at--176--6731Chr12:5433265..5433289 (25 bp)
GTTCTCTATCCAACGGTGGCTTTAA
LOC_Os12g10270
OsAffx.31678.2.S1_at--530--8491Chr12:5433305..5433552 (25 bp)
TGGCTATGCCCACATGCACGCCAAA
LOC_Os12g10270
OsAffx.31678.2.S1_at--1143--7151Chr12:5433557..5433581 (25 bp)
GTCTCTCTCATGTTTCTTCAGTTTA
LOC_Os12g10270
OsAffx.31678.2.S1_at--353--3655Chr12:5433572..5433596 (25 bp)
CTTCAGTTTACTGTTCAAGTTCAAC
LOC_Os12g10270
Target Sequence 
AATGAATCTAATGGCTTTCCTGGCGCCAAAGATGGCAACTATGTTGCAGACGTTCTTGGAGAAGCAATGGTCGCTATAGA
GAAGGCTATACAAGATTCCTACCCGGTCTGGTCTATACCACTTGTACTTGATCCTCGGTACAAACTCGCACGCACAAAAT
TTATTTTCCAAACAGCCTTCGGCACCGAGGCTGCAGCCGATTATATCTCTAAGGTAACACAAAATATCACTAAGCTATAC
TCTGACTATGTTGAAGATCATGGTAGTGCCATGAATGTGGTGGCCGTTAGCAGCACTGATCCACTGCAACAAGCATGGGA
TGAGCACTGCCGAGGAGAAGCCCAAACAGACCTCGACCGTTATCTGAAGGATGAGCTAGTCCATGATCCAACATCAGGTT
TTGATATTCTCAACTGGTGGAAGGTTCACGGGTCGGTTCTCTATCCAACGGTGGCTTTAATGGCGGGGGATGCTTTGGCT
ATGCCCACATGCACGCCAAACTCTGTCTCTCTCATGTTTCTTCAGTTTACTGTTCAAGTTCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31678.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis