Browse Element(s) Details


OsAffx.3168.1.S1_at

Description tigr:9631.m00707
TID=OsAffx.3168.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g077209/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07670NANA3+3873943..3877272transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07680Os.45976.1.S1_x_at3/113+3879573..3883226transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g07690NANA3+3889584..3890018hypothetical protein
LOC_Os03g07700OsAffx.12769.1.S1_at11/113+3890769..3891122hypothetical protein
LOC_Os03g07710OsAffx.3167.1.S1_at11/113+3895162..3895670hypothetical protein
LOC_Os03g07720OsAffx.3168.1.S1_at9/113+3897711..3903651hypothetical protein
LOC_Os03g07730OsAffx.12770.1.S1_at11/113+3904351..3905698hypothetical protein
LOC_Os03g07740NANA3+3914200..3914762hypothetical protein
LOC_Os03g07750Os.53989.1.S1_at11/113+3915792..3919929expressed protein
LOC_Os03g07760OsAffx.16463.2.S1_at11/113+3921220..3922075hypothetical protein
LOC_Os03g07770NANA3+3923909..3930063transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009630biological_processgravitropism
GO:0009638biological_processphototropism
GO:0009733biological_processresponse to auxin stimulus
GO:0009785biological_processblue light signaling pathway
GO:0009908biological_processflower development
GO:0010114biological_processresponse to red light
GO:0010218biological_processresponse to far red light
GO:0016481biological_processnegative regulation of transcription
GO:0040008biological_processregulation of growth
GO:0045941biological_processpositive regulation of transcription
GO:0048366biological_processleaf development
GO:0048527biological_processlateral root development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0003713molecular_functiontranscription coactivator activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3168.1.S1_at--1112--8571Chr03:3901506..3901530 (25 bp)
TGGTTCCTGCCCCAATTTATGGAAG
LOC_Os03g07720
OsAffx.3168.1.S1_at--213--2831NONE
AAGTACCCACTGAGCATCCTTGAAG
NONE
OsAffx.3168.1.S1_at--1071--4971Chr03:3901154..3901178 (25 bp)
GCATCCTTGAAGTCAACCTGCTGTC
LOC_Os03g07720
OsAffx.3168.1.S1_at--309--2651Chr03:3900996..3901020 (25 bp)
AACCACTGGCTGATTGTGATGTGCT
LOC_Os03g07720
OsAffx.3168.1.S1_at--975--4691Chr03:3900974..3900998 (25 bp)
GCTGGAATTCAGTACGATGCCTTTG
LOC_Os03g07720
OsAffx.3168.1.S1_at--3--2551Chr03:3899514..3899534 (21 bp)
AACTCTTTGCCAATTCTCTACGAGA
LOC_Os03g07720
OsAffx.3168.1.S1_at--50--5531Chr03:3899437..3899461 (25 bp)
GAAACAGCTTATTGCCAGATCTCAC
LOC_Os03g07720
OsAffx.3168.1.S1_at--261--1191NONE
AGTAGCACCAGAAGGCTCTGCCTCA
NONE
OsAffx.3168.1.S1_at--693--3371Chr03:3897928..3898150 (25 bp)
CAGCGTTCTGTCGTTGTAAGTTATC
LOC_Os03g07720
OsAffx.3168.1.S1_at--957--8971Chr03:3897880..3897904 (25 bp)
TGAACGAAGGACCTCAGGGCTCCCT
LOC_Os03g07720
OsAffx.3168.1.S1_at--1114--1091Chr03:3897761..3897785 (25 bp)
AGTGGATGGTCAGTACTCTGCTTCC
LOC_Os03g07720
Target Sequence 
TGGTTCCTGCCCCAATTTATGGAAGCACTTCTGGAAATGGTTAACAAGTACCCACTGAGCATCCTTGAAGTCAACCTGCT
GTCAAAATGGTTAGCAAAAAAACCACTGGCTGATTGTGATGTGCTGGAATTCAGTACGATGCCTTTGAAGAGAAAAAGCC
AACTCTTTGCCAATTCTCTACGAGATAATTATGACTATGCTAATGTTTATGAACATAATGGTTTCTGTATAGGTCTCGAA
ACAGCTTATTGCCAGATCTCACAAGCAGATAACAGTAGCACCAGAAGGCTCTGCCTCACTGCCGCTGCGACAGCGTTCTG
TCGTTGTAAGTTATCTCTAATTGTAAAGTTCCGAACGGTGAACGAAGGACCTCAGGGCTCCCTGTCGAACGCAGCCTTGG
GGGAGTTCTTTCAGCTATGGGATGAATTGAGGGGGGTGGAACTGGAAGACAGACGACGTGATCCTGTGGAAATTGTCAGT
GGATGGTCAGTACTCTGCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3168.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis