Browse Element(s) Details


OsAffx.31774.1.S1_at

Description tigr:9640.m01702
TID=OsAffx.31774.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1738011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein
LOC_Os12g17380OsAffx.31774.1.S1_at11/1112+9951190..9952215hypothetical protein
LOC_Os12g17390OsAffx.31811.2.S1_x_at1/1112+9956829..9958626Zinc knuckle family protein
LOC_Os12g17400NANA12+9971351..9971878hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31774.1.S1_at--424--7591Chr12:9951822..9951846 (25 bp)
GGGCTACAATAGTGACTCGTCGAGG
LOC_Os12g17380
OsAffx.31774.1.S1_at--303--9111Chr12:9951968..9951992 (25 bp)
TGCGACGTGGGTGCGGGACTTGCTC
LOC_Os12g17380
OsAffx.31774.1.S1_at--558--8111Chr12:9951983..9952007 (25 bp)
GGACTTGCTCGTCGCCACTGCAGTT
LOC_Os12g17380
OsAffx.31774.1.S1_at--49--3391Chr12:9952031..9952055 (25 bp)
CAGCTTCAATGACAGGACAGGATCC
LOC_Os12g17380
OsAffx.31774.1.S1_at--1025--671Chr12:9952039..9952063 (25 bp)
ATGACAGGACAGGATCCTCCCACAA
LOC_Os12g17380
OsAffx.31774.1.S1_at--211--2531Chr12:9952062..9952086 (25 bp)
AACTATGCGCTCTCCCATCTATCGT
LOC_Os12g17380
OsAffx.31774.1.S1_at--1042--8071Chr12:9952095..9952119 (25 bp)
GGAGCTATACCTCATTGATGCTGTT
LOC_Os12g17380
OsAffx.31774.1.S1_at--732--51Chr12:9952108..9952132 (25 bp)
ATTGATGCTGTTGGTTGGCGCCGAT
LOC_Os12g17380
OsAffx.31774.1.S1_at--134--631Chr12:9952112..9952136 (25 bp)
ATGCTGTTGGTTGGCGCCGATGCTC
LOC_Os12g17380
OsAffx.31774.1.S1_at--1011--6211Chr12:9952145..9952169 (25 bp)
GATGGCGACAGCATTCACGAGGCGT
LOC_Os12g17380
OsAffx.31774.1.S1_at--716--3571Chr12:9952156..9952180 (25 bp)
CATTCACGAGGCGTGGGCCACAAAT
LOC_Os12g17380
Target Sequence 
GGGCTACAATAGTGACTCGTCGAGGAAAGGGGGACAGCGGATCCATCCTCGTCGAAGCTCTTGCCGTCGGCGAGGAGAGG
AGGAGGACGTGGGGAAGGCGACAGTGACTGGGTGGGCAGTGGTGATGTGGGTGCAGGAAGGGCGGCTGCGACGTGGGTGC
GGGACTTGCTCGTCGCCACTGCAGTTTGGGGAGCTCGAGGACGGGCGTTCAGCTTCAATGACAGGACAGGATCCTCCCAC
AACTATGCGCTCTCCCATCTATCGTGCGCTCAAGGAGCTATACCTCATTGATGCTGTTGGTTGGCGCCGATGCTCGAGTT
GGAGATGGCGACAGCATTCACGAGGCGTGGGCCACAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31774.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis