Browse Element(s) Details


OsAffx.21371.1.S1_at

Description gb:NM_192731.1
DB_XREF= gi:34912545
GEN=P0410E03.11
TID=OsAffx.21371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0410E03.11 (P0410E03.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g173402/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17310Os.15013.1.S1_at11/1112+9904893..9912468myosin heavy chain, putative, expressed
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein
LOC_Os12g17380OsAffx.31774.1.S1_at11/1112+9951190..9952215hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21371.1.S1_at--241--9175Chr10:17198920..17199226 (25 bp)
TCCGGTCGGATTTCACGAAATTTCG
NONE
OsAffx.21371.1.S1_at--625--10632Chr07:18540143..18540166 (24 bp)
TTCGACGTTTCGACAAGGCTCGAAC
NONE
OsAffx.21371.1.S1_at--521--5611Chr01:24447004..24447259 (25 bp)
GACAAGGCTCGAACAATTTCGCCAA
NONE
OsAffx.21371.1.S1_at--969--5491Chr01:24446994..24447014 (21 bp)
GAACAATTTCGCCAAAATCGACCAG
NONE
OsAffx.21371.1.S1_at--374--3111Chr01:24446991..24447014 (24 bp)
CAATTTCGCCAAAATCGACCAGTTT
NONE
OsAffx.21371.1.S1_at--384--14110Chr11:4484844..4484864 (21 bp)
AGAACTTGTCGGCAAACTCAGTAAA
NONE
OsAffx.21371.1.S1_at--571--2052Chr12:9924787..9924823 (25 bp)
ACTTGTCGGCAAACTCAGTAAATTT
LOC_Os12g17340
OsAffx.21371.1.S1_at--326--10571Chr01:24446903..24446927 (25 bp)
TTCTACCGGATTTCACGAAATTCCA
NONE
OsAffx.21371.1.S1_at--794--10491Chr01:24446892..24446916 (25 bp)
TTCACGAAATTCCAAATTCCGCCTG
NONE
OsAffx.21371.1.S1_at--85--5591Chr01:24446887..24446911 (25 bp)
GAAATTCCAAATTCCGCCTGACCGA
NONE
OsAffx.21371.1.S1_at--1148--9191Chr01:24446882..24446906 (25 bp)
TCCAAATTCCGCCTGACCGAAACGG
NONE
Target Sequence 
TCCGGTCGGATTTCACGAAATTTCGACGTTTCGACAAGGCTCGAACAATTTCGCCAAAATCGACCAGTTTTCGAGAACTT
GTCGGCAAACTCAGTAAATTTGATTTATAAAATTTGTTCGGAATTTACCGGTTTTCTACCGGATTTCACGAAATTCCAAA
TTCCGCCTGACCGAAACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis