Browse Element(s) Details


Os.57327.1.S1_at

Description gb:AK111310.1
DB_XREF= gi:32996519
TID=Os.57327.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-C02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-C02, full insert sequence.
FL= gb:AK111310.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1732011/11Prenyl transferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17290Os.47463.1.S1_x_at4/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17290Os.14491.2.S1_x_at3/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17310Os.15013.1.S1_at11/1112+9904893..9912468myosin heavy chain, putative, expressed
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified
LOC_Os12g17360OsAffx.8965.1.S1_at5/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17360Os.27691.2.S1_x_at1/1112+9938586..9942053retrotransposon protein, putative, unclassified
LOC_Os12g17370OsAffx.19716.1.S1_at10/1112+9944312..9946167hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0009536cellular_componentplastid
GO:0004161molecular_functiondimethylallyltranstransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57327.1.S1_at--58--2471Chr12:9919479..9919503 (25 bp)
AACAACCTCAAATCGGTGAGCTTCA
LOC_Os12g17320
Os.57327.1.S1_at--685--3671Chr12:9919453..9919477 (25 bp)
CTTTTCCTCCCAAAGTTTGCATCAT
LOC_Os12g17320
Os.57327.1.S1_at--234--1211Chr12:9919440..9919464 (25 bp)
AGTTTGCATCATTCTGTTCAGCTTG
LOC_Os12g17320
Os.57327.1.S1_at--416--111Chr12:9919430..9919454 (25 bp)
ATTCTGTTCAGCTTGTTCATGATAC
LOC_Os12g17320
Os.57327.1.S1_at--206--71Chr12:9919398..9919422 (25 bp)
ATTGAATAGCTTCTCTTTCTCCTAG
LOC_Os12g17320
Os.57327.1.S1_at--1134--10291Chr12:9919383..9919407 (25 bp)
TTTCTCCTAGCACATTTGGTACAAG
LOC_Os12g17320
Os.57327.1.S1_at--861--3571Chr12:9919371..9919395 (25 bp)
CATTTGGTACAAGGCTCACGGTTGC
LOC_Os12g17320
Os.57327.1.S1_at--795--9651Chr12:9919356..9919380 (25 bp)
TCACGGTTGCTACGACATAGTCCAA
LOC_Os12g17320
Os.57327.1.S1_at--544--2431Chr12:9919319..9919343 (25 bp)
AAAAGTTGCACTGATTTTGCTTGGA
LOC_Os12g17320
Os.57327.1.S1_at--1121--5451Chr12:9919286..9919310 (25 bp)
GAACTGTGACAGTTTTTAGTCCATA
LOC_Os12g17320
Os.57327.1.S1_at--1056--10311Chr12:9919213..9919237 (25 bp)
TTTAAGTACTTGGTTGGTTGGCTGG
LOC_Os12g17320
Target Sequence 
AACAACCTCAAATCGGTGAGCTTCACCTTTTCCTCCCAAAGTTTGCATCATTCTGTTCAGCTTGTTCATGATACAAGTAT
GATTGAATAGCTTCTCTTTCTCCTAGCACATTTGGTACAAGGCTCACGGTTGCTACGACATAGTCCAATACAAAAAAAAA
AAAAAGTTGCACTGATTTTGCTTGGAAATGTATCGAACTGTGACAGTTTTTAGTCCATAAATTTTAGAATAAAAAAAATT
TGCACTTAGTGATAAAGTTGTGGACAATTTAAGTACTTGGTTGGTTGGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis