Browse Element(s) Details


Os.15013.1.S1_at

Description gb:AK102333.1
DB_XREF= gi:32987542
TID=Os.15013.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15013 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033090P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033090P09, full insert sequence.
FL= gb:AK070395.1 gb:AK102333.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1731011/11myosin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17260Os.46314.2.S1_x_at4/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.10731.2.A1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.47114.1.S1_x_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260OsAffx.32036.1.S1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17270OsAffx.22896.1.S1_x_at1/1112+9880827..9883129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17280OsAffx.7618.1.S1_at11/1112+9883807..9884187hypothetical protein
LOC_Os12g17290Os.47463.1.S1_x_at4/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17290Os.14491.2.S1_x_at3/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17310Os.15013.1.S1_at11/1112+9904893..9912468myosin heavy chain, putative, expressed
LOC_Os12g17320Os.57327.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.22579.1.S1_at11/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17320Os.38751.1.A1_at4/1112+9912704..9919796Prenyl transferase, putative, expressed
LOC_Os12g17330OsAffx.19714.1.S1_at11/1112+9923165..9923641hypothetical protein
LOC_Os12g17340OsAffx.19715.1.S1_at11/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17340OsAffx.21371.1.S1_at2/1112+9923982..9926400Leucine Rich Repeat family protein
LOC_Os12g17350NANA12+9929934..9933040retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15013.1.S1_at--325--8991Chr12:9911901..9911925 (25 bp)
TGAAGCTCAGCCTGCTCCAGAAGCG
LOC_Os12g17310
Os.15013.1.S1_at--556--4591Chr12:9911923..9911947 (25 bp)
GCGCAAGCACATGGAACTGCATCTT
LOC_Os12g17310
Os.15013.1.S1_at--852--431Chr12:9911943..9911967 (25 bp)
ATCTTCCCCTGTACAGAAAGCTTCT
LOC_Os12g17310
Os.15013.1.S1_at--960--5271Chr12:9911988..9912012 (25 bp)
GAATGATGGACCTCACAAGAACAGC
LOC_Os12g17310
Os.15013.1.S1_at--796--1451Chr12:9912068..9912092 (25 bp)
AGAAGAAGAATCATGCCGACGGCAG
LOC_Os12g17310
Os.15013.1.S1_at--15--3071Chr12:9912128..9912152 (25 bp)
AATCTATCTGAAGCTCACGTCTGAA
LOC_Os12g17310
Os.15013.1.S1_at--97--10191Chr12:9912237..9912261 (25 bp)
TATATCTATGACTTGCCTGTTCCTG
LOC_Os12g17310
Os.15013.1.S1_at--1129--5671Chr12:9912261..9912285 (25 bp)
GACTATTTGGGCTCCTGTGATAAGT
LOC_Os12g17310
Os.15013.1.S1_at--101--10251Chr12:9912296..9912320 (25 bp)
TTTGTACCTCTGAAATTCGCTGTGG
LOC_Os12g17310
Os.15013.1.S1_at--598--5031Chr12:9912335..9912359 (25 bp)
GCAGTTTGTCTGCTATCAACAGAAA
LOC_Os12g17310
Os.15013.1.S1_at--231--131Chr12:9912372..9912396 (25 bp)
ATTCATGTCGTGCATTACTTTCAGA
LOC_Os12g17310
Target Sequence 
TGAAGCTCAGCCTGCTCCAGAAGCGCAAGCACATGGAACTGCATCTTCCCCTGTACAGAAAGCTTCTGCTGGAAAAGCCA
ATGAGAAGAATGATGGACCTCACAAGAACAGCAGAACACTATTGAAAAAGAGCTTTATGCTACCAAATATTACAAGCATG
TTCCATAAGAAGAAGAATCATGCCGACGGCAGTTCTCCTTCACATCTTCCTGGGGACAAATCTGTATAATCTATCTGAAG
CTCACGTCTGAATGATGTGATTCCAAACTNGGAATCATGGCTTTATGTATGATATTATATTTGTAGTTGCTTGTAATATA
TAATGTTATCCTGGTCTATATCTATGACTTGCCTGTTCCTGACTATTTGGGCTCCTGTGATAAGTTTTTTTCTTTTTTGT
ACCTCTGAAATTCGCTGTGGNTATATTGATCTGAGCAGTTTGTCTGCTATCAACAGAAATAACCACGTTTTATTCATGTC
GTGCATTACTTTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15013.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis