Browse Element(s) Details


OsAffx.7618.1.S1_at

Description tigr:9640.m01692
TID=OsAffx.7618.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1728011/11hypothetical protein
LOC_Os11g171702/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17230OsAffx.31772.1.S1_at11/1112+9862214..9864857hypothetical protein
LOC_Os12g17240NANA12+9868471..9868994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17250OsAffx.31773.1.S1_at11/1112+9872917..9873833hypothetical protein
LOC_Os12g17260Os.46314.2.S1_x_at4/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.10731.2.A1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.47114.1.S1_x_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260OsAffx.32036.1.S1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17270OsAffx.22896.1.S1_x_at1/1112+9880827..9883129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17280OsAffx.7618.1.S1_at11/1112+9883807..9884187hypothetical protein
LOC_Os12g17290Os.47463.1.S1_x_at4/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17290Os.14491.2.S1_x_at3/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17310Os.15013.1.S1_at11/1112+9904893..9912468myosin heavy chain, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7618.1.S1_at--893--7531Chr12:9884086..9884110 (25 bp)
GTGGCTGCGCGGCATCGGTGTGGCG
LOC_Os12g17280
OsAffx.7618.1.S1_at--165--9431Chr12:9884018..9884042 (25 bp)
TCGTGGCGCGGCTTCATTGGCACTG
LOC_Os12g17280
OsAffx.7618.1.S1_at--41--8411Chr12:9884014..9884038 (25 bp)
GGCGCGGCTTCATTGGCACTGCCAG
LOC_Os12g17280
OsAffx.7618.1.S1_at--943--8291Chr12:9884009..9884033 (25 bp)
GGCTTCATTGGCACTGCCAGTGCGA
LOC_Os12g17280
OsAffx.7618.1.S1_at--512--10551Chr12:9884006..9884030 (25 bp)
TTCATTGGCACTGCCAGTGCGACGT
LOC_Os12g17280
OsAffx.7618.1.S1_at--417--10871Chr12:9884002..9884026 (25 bp)
TTGGCACTGCCAGTGCGACGTCGTC
LOC_Os12g17280
OsAffx.7618.1.S1_at--422--8251Chr12:9883883..9883907 (25 bp)
GGCAGCTGGCTAAAGATATTTTCCC
LOC_Os12g17280
OsAffx.7618.1.S1_at--961--46960Chr12:14588376..14588509 (25 bp)
GCTGGCTAAAGATATTTTCCCGCTA
NONE
OsAffx.7618.1.S1_at--370--84952Chr12:14588490..14588509 (20 bp)
TGGCTAAAGATATTTTCCCGCTAAA
NONE
OsAffx.7618.1.S1_at--97--48341Chr11:20860294..20860313 (20 bp)
GCTAAAGATATTTTCCCGCTAAAGA
NONE
OsAffx.7618.1.S1_at--166--1271Chr12:9883853..9883877 (25 bp)
AGATATTTTCTATCTTTACTCCCGG
LOC_Os12g17280
Target Sequence 
GTGGCTGCGCGGCATCGGTGTGGCGCGGTGGCGGCGTTGCACGGCGGCGGTGCCGTGCCGCAACGGCGTCGTGGCGCGGC
TTCATTGGCACTGCCAGTGCGACGTCGTCGCCGGTGCCGGCCGCATCGAGGTCGGGGTCGGCATCGTCGGCGCGGCAGAG
TCATGTTCGGCCGCGACGACGTCGGCGACGGCGTCGGCAACGAGGCAGCTGGCTAAAGATATTTTCCCGCTAAAGATATT
TTCTATCTTTACTCCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7618.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis