Browse Element(s) Details


OsAffx.31772.1.S1_at

Description tigr:9640.m01687
TID=OsAffx.31772.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1723011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17190NANA12+9837622..9840542retrotransposon protein, putative, unclassified
LOC_Os12g17200OsAffx.31771.1.S1_at11/1112+9842050..9842331hypothetical protein
LOC_Os12g17210NANA12+9846236..9848222retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g17220NANA12+9849894..9852835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17230OsAffx.31772.1.S1_at11/1112+9862214..9864857hypothetical protein
LOC_Os12g17240NANA12+9868471..9868994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17250OsAffx.31773.1.S1_at11/1112+9872917..9873833hypothetical protein
LOC_Os12g17260Os.46314.2.S1_x_at4/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.10731.2.A1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.47114.1.S1_x_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260OsAffx.32036.1.S1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17270OsAffx.22896.1.S1_x_at1/1112+9880827..9883129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17280OsAffx.7618.1.S1_at11/1112+9883807..9884187hypothetical protein
LOC_Os12g17290Os.47463.1.S1_x_at4/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17290Os.14491.2.S1_x_at3/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31772.1.S1_at--694--8491Chr12:9862294..9862318 (25 bp)
TGGCTTGGTGCTGCAACGGTCGCGG
LOC_Os12g17230
OsAffx.31772.1.S1_at--179--8371Chr12:9862398..9862422 (25 bp)
GGCGTGACGGCTTGGTGCTTGCTGC
LOC_Os12g17230
OsAffx.31772.1.S1_at--682--2431Chr12:9864600..9864624 (25 bp)
AAAAGGACAACATGCCACTCCGAAT
LOC_Os12g17230
OsAffx.31772.1.S1_at--347--591Chr12:9864611..9864635 (25 bp)
ATGCCACTCCGAATCGGGTTTTGAC
LOC_Os12g17230
OsAffx.31772.1.S1_at--129--3711Chr12:9864617..9864641 (25 bp)
CTCCGAATCGGGTTTTGACAAAATG
LOC_Os12g17230
OsAffx.31772.1.S1_at--593--9191Chr12:9864640..9864664 (25 bp)
TGCCACCCCCTACAATACAAAGGAT
LOC_Os12g17230
OsAffx.31772.1.S1_at--189--12Chr12:9864668..9864692 (25 bp)
ATGCCACTTTAATAGGTTACTTTCA
LOC_Os12g17230
OsAffx.31772.1.S1_at--938--3471Chr12:9864691..9864715 (25 bp)
CAGGATATTTTGTCACTTTGGAAGA
LOC_Os12g17230
OsAffx.31772.1.S1_at--937--292Chr12:9864729..9864753 (25 bp)
ATACCCTTGGATGTGGATAAATTGG
LOC_Os12g17230
OsAffx.31772.1.S1_at--142--8911Chr12:9864776..9864800 (25 bp)
TGAGATCGACGGTACTCATGCTTCC
LOC_Os12g17230
OsAffx.31772.1.S1_at--1097--1871Chr12:9864784..9864808 (25 bp)
ACGGTACTCATGCTTCCCGGCGGTG
LOC_Os12g17230
Target Sequence 
TGGCTTGGTGCTGCAACGGTCGCGGCGACGACTCATTGCTGCGGGGCGCGACGAGCTCCTCCCCCTCCCCCTCCCACGGG
TGTGGCGACGGCTCGGTGCTGCGGGGCGTGACGGCTTGGTGCTTGCTGCTCGGTCGAGAAAAAGGACAACATGCCACTCC
GAATCGGGTTTTGACAAAATGCCACCCCCTACAATACAAAGGATAAAATGCCACTTTAATAGGTTACTTTCAGGATATTT
TGTCACTTTGGAAGATTTTAAGACCAAAATACCCTTGGATGTGGATAAATTGGAAGAGGGAGGAGCGGGGAAGGTTGAGA
TCGACGGTACTCATGCTTCCCGGCGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis