Browse Element(s) Details


OsAffx.31801.4.S1_at

Description tigr:9630.m02784
TID=OsAffx.31801.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2917010/11hypothetical protein
LOC_Os10g227701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g29150Os.8269.1.A1_at11/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29150OsAffx.24492.1.S1_at1/112+17265313..17269995F-box domain containing protein, expressed
LOC_Os02g29160Os.52932.1.S1_at11/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2785.1.S1_at6/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29160OsAffx.2524.2.S1_at1/112+17271450..17284330ankyrin-like protein, putative, expressed
LOC_Os02g29170OsAffx.31801.4.S1_at10/112+17288054..17290035hypothetical protein
LOC_Os02g29180NANA2+17294959..17295477hypothetical protein
LOC_Os02g29190OsAffx.2786.1.S1_at11/112+17303250..17310286TPR Domain containing protein, expressed
LOC_Os02g29200NANA2+17312001..17312441hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31801.4.S1_at--502--7531Chr02:17288384..17288633 (25 bp)
GTGGCTCGAACTTTTCGGTGGTCAA
LOC_Os02g29170
OsAffx.31801.4.S1_at--283--10271Chr02:17288625..17288645 (21 bp)
TTTCGGTGGTCAATCGGAGTTCGGA
LOC_Os02g29170
OsAffx.31801.4.S1_at--453--912Chr02:17288709..17288733 (25 bp)
AGGCTGTTTTGGATGTGTCTTCAAC
LOC_Os02g29170
OsAffx.31801.4.S1_at--28--7451NONE
GTGTCTTCAACAAGACGCCTTCAAC
NONE
OsAffx.31801.4.S1_at--311--5811Chr02:17289854..17289878 (25 bp)
GACGCCTTCAACGTTTTAATGCCCA
LOC_Os02g29170
OsAffx.31801.4.S1_at--974--4537Chr05:12927002..12927026 (25 bp)
GCCCGTCGGCGCTTGAAGCACACTT
NONE
OsAffx.31801.4.S1_at--446--105112Chr11:23147722..23147741 (20 bp)
TTCAAGGTGTATGCCGGCAAGGCTA
NONE
OsAffx.31801.4.S1_at--694--83117Chr11:23147737..23147761 (25 bp)
GGCTAAGGTCACAAGCTTTTCATCA
NONE
OsAffx.31801.4.S1_at--46--10332Chr10:5015950..5015974 (25 bp)
TTTCATCAATCCCATATGGCAATTA
NONE
OsAffx.31801.4.S1_at--1102--51715Chr10:5015968..5015992 (25 bp)
GCAATTATCTCTGCGGGTGATTCCC
NONE
OsAffx.31801.4.S1_at--245--77515Chr11:23147787..23148008 (25 bp)
GGTGATTCCCGCAACAACGGTGAAT
NONE
Target Sequence 
GTGGCTCGAACTTTTCGGTGGTCAATCGGAGTTCGGAGCGGGTTGCGGGTCGAGGTGGAGCCGCAAAGGTGGCGCAAGCC
ACGCGTGGAGCCTCTCCTAGAGGCTGTTTTGGATGTGTCTTCAACAAGACGCCTTCAACGTTTTAATGCCCACGCCCGTC
GGCGCTTGAAGCACACTTCAAGGTGTATGCCGGCAAGGCTAAGGTCACAAGCTTTTCATCAATCCCATATGGCAATTATC
TCTGCGGGTGATTCCCGCAACAACGGTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31801.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis