Browse Element(s) Details


OsAffx.31861.1.S1_at

Description tigr:9640.m02308
TID=OsAffx.31861.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2423010/11hypothetical protein
LOC_Os03g197102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24200OsAffx.20387.1.S1_x_at1/1112+13788660..13791841retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24210OsAffx.31069.5.S1_at5/1112+13792394..13796212retrotransposon protein, putative, unclassified
LOC_Os12g24210OsAffx.31069.5.S1_x_at3/1112+13792394..13796212retrotransposon protein, putative, unclassified
LOC_Os12g24220OsAffx.22355.1.S1_at1/1112+13799544..13804626retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g24230OsAffx.31861.1.S1_at10/1112+13805157..13808061hypothetical protein
LOC_Os12g24230Os.9598.1.S1_at3/1112+13805157..13808061hypothetical protein
LOC_Os12g24240OsAffx.19795.1.S1_s_at10/1112+13811848..13812773expressed protein
LOC_Os12g24250NANA12+13813043..13827057retrotransposon protein, putative, unclassified, expressed
LOC_Os12g24260NANA12+13830259..13838542transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31861.1.S1_at--478--10111Chr12:13807964..13807988 (25 bp)
TATGCAGGAACATTTCGCCTACCGC
LOC_Os12g24230
OsAffx.31861.1.S1_at--1107--4291Chr12:13807947..13807971 (25 bp)
CCTACCGCGCTCGAAGGAGCGAAGT
LOC_Os12g24230
OsAffx.31861.1.S1_at--1039--2892Chr12:13807920..13807944 (25 bp)
AATGGATTGGGAGCGGGACCTCATC
LOC_Os12g24230
OsAffx.31861.1.S1_at--22--8112Chr12:13807905..13807929 (25 bp)
GGACCTCATCCCCAGAAGTGGAGAC
LOC_Os12g24230
OsAffx.31861.1.S1_at--977--5991NONE
GAGACCGAACAATCCAGATCTGGCA
NONE
OsAffx.31861.1.S1_at--759--9151Chr12:13805512..13805536 (25 bp)
TGCGCAGGCATGACGCTCGCTCGGC
LOC_Os12g24230
OsAffx.31861.1.S1_at--798--4691Chr12:13805484..13805508 (25 bp)
GCGGCACAAGCACACAGCAGCGATG
LOC_Os12g24230
OsAffx.31861.1.S1_at--1053--2131Chr12:13805471..13805495 (25 bp)
ACAGCAGCGATGCACATGCGCACAA
LOC_Os12g24230
OsAffx.31861.1.S1_at--1034--651Chr12:13805462..13805486 (25 bp)
ATGCACATGCGCACAAGCGCAGCGG
LOC_Os12g24230
OsAffx.31861.1.S1_at--222--4071Chr12:13805437..13805461 (25 bp)
CGAGGCACACGTGCAGTGGCACGAC
LOC_Os12g24230
OsAffx.31861.1.S1_at--690--9051Chr12:13805426..13805450 (25 bp)
TGCAGTGGCACGACGCTCGCACGGC
LOC_Os12g24230
Target Sequence 
TATGCAGGAACATTTCGCCTACCGCGCTCGAAGGAGCGAAGTGCAATGGATTGGGAGCGGGACCTCATCCCCAGAAGTGG
AGACCGAACAATCCAGATCTGGCAAATGCGGACAGGGGTACGTCTTCTGACCATCCCGTGCCCCAAGGGAAGCAGGATCT
TACAGCCATCGACGAGATTCATGTCATCGCCCTTCTCATCGTCTTATTCACCATTGGAGGTGGAGCTGGGCGGCGCGGCG
GCGTGGTGAAGGGCGATGCAGGCGAGGATGTGTGGCGCGAGCGGCAGCGCTGCGCAGGCATGACGCTCGCTCGGCGGCGC
GGCACAAGCACACAGCAGCGATGCACATGCGCACAAGCGCAGCGGCGAGGCACACGTGCAGTGGCACGACGCTCGCACGG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31861.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis