Browse Element(s) Details


OsAffx.31869.2.S1_at

Description gb:NM_194781.1
DB_XREF= gi:37530921
TID=OsAffx.31869.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0087H07.18), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0481010/11retrotransposon protein, putative, unclassified
LOC_Os10g189701/11retrotransposon protein, putative, unclassified
LOC_Os07g458501/11retrotransposon protein, putative, unclassified
LOC_Os06g149901/11retrotransposon protein, putative, unclassified
LOC_Os04g048201/11retrotransposon protein, putative, unclassified
LOC_Os10g030201/11retrotransposon protein, putative, unclassified
LOC_Os05g257401/11retrotransposon protein, putative, unclassified
LOC_Os01g267401/11retrotransposon protein, putative, unclassified
LOC_Os09g105301/11retrotransposon protein, putative, unclassified
LOC_Os11g263701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g189601/11retrotransposon protein, putative, unclassified
LOC_Os04g077301/11retrotransposon protein, putative, unclassified
LOC_Os04g230801/11retrotransposon protein, putative, unclassified
LOC_Os03g417101/11retrotransposon protein, putative, unclassified
LOC_Os08g165101/11retrotransposon protein, putative, unclassified
LOC_Os12g224201/11retrotransposon protein, putative, unclassified
LOC_Os05g179001/11retrotransposon protein, putative, unclassified
LOC_Os01g380581/11retrotransposon protein, putative, unclassified
LOC_Os04g078601/11retrotransposon protein, putative, unclassified
LOC_Os01g380491/11retrotransposon protein, putative, unclassified
LOC_Os03g613701/11retrotransposon protein, putative, unclassified
LOC_Os08g207001/11retrotransposon protein, putative, unclassified
LOC_Os12g183101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g279501/11retrotransposon protein, putative, unclassified
LOC_Os02g300001/11retrotransposon protein, putative, unclassified
LOC_Os03g237701/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04780Os.46729.1.S1_at10/1110+2280854..2284863F-box domain containing protein, expressed
LOC_Os10g04790OsAffx.30280.1.S1_x_at11/1110+2291947..2292198hypothetical protein
LOC_Os10g04800Os.46728.1.S1_at5/1110+2301441..2301732hypothetical protein
LOC_Os10g04810OsAffx.31869.2.S1_at10/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.13933.1.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.5.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.4.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.3.S1_x_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04810OsAffx.31869.1.S1_at1/1110+2303612..2306667retrotransposon protein, putative, unclassified
LOC_Os10g04840OsAffx.30282.1.S1_at11/1110+2323745..2324838hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.2.S1_at--65--81525Chr12:12658037..12658468 (25 bp)
GGACAACCGTCAAGGACAGTCGCAA
LOC_Os12g22420
OsAffx.31869.2.S1_at--208--3193Chr04:11805897..11805921 (25 bp)
CAATCAGTGCCAGTTCAGCAGAACC
NONE
OsAffx.31869.2.S1_at--890--9651Chr10:2305773..2305797 (25 bp)
TCAGCAGAACCAGCCTCAAGAAGAT
LOC_Os10g04810
OsAffx.31869.2.S1_at--129--5331NONE
GAAGGGAGCAGCAGCCCTTGACGCC
NONE
OsAffx.31869.2.S1_at--724--8631Chr10:2303856..2303880 (25 bp)
TGGGTATGGCGGAACCTATTCGCCC
LOC_Os10g04810
OsAffx.31869.2.S1_at--254--8931Chr10:2303823..2303847 (25 bp)
TGACGCCTTACCTTATTGGTATTGC
LOC_Os10g04810
OsAffx.31869.2.S1_at--1068--3651Chr10:2303812..2303836 (25 bp)
CTTATTGGTATTGCGGCGAAGGGCC
LOC_Os10g04810
OsAffx.31869.2.S1_at--539--7551Chr10:2303792..2303816 (25 bp)
GGGCCTAGGTGTGGCAAAACCTGTT
LOC_Os10g04810
OsAffx.31869.2.S1_at--253--8932Chr10:2303754..2303778 (25 bp)
TGACGTCGTACCTTATTGGTAACAT
LOC_Os10g04810
OsAffx.31869.2.S1_at--1126--7711Chr10:2303717..2303741 (25 bp)
GGGTGTGGCAAAAGGCTCCCATTTC
LOC_Os10g04810
OsAffx.31869.2.S1_at--619--3571Chr10:2303698..2303722 (25 bp)
CATTTCAGCCTTTTAGTCTGGGTTC
LOC_Os10g04810
Target Sequence 
GGACAACCGTCAAGGACAGTCGCAACAGTTGAACATCAGTTGTGAGATCAATTCAGAGACTAATGCAAGCAATGAAGTTA
ACATTGAGCAAGCTACTCAATCAGTGCCAGTTCAGCAGAACCAGCCTCAAGAAGATAACAGTAGTGGAAGGGAGCAGCAG
CCCTTGACGCCATACCTTACTGGTACTGTGGCGAAGGGTCTGGGTATGGCGGAACCTATTCGCCCCCAGCCCTTGACGCC
TTACCTTATTGGTATTGCGGCGAAGGGCCTAGGTGTGGCAAAACCTGTTCGCCCACAGCCCTTGACGTCGTACCTTATTG
GTAACATGGCGAAGGGTGTGGGTGTGGCAAAAGGCTCCCATTTCAGCCTTTTAGTCTGGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis