Browse Element(s) Details


OsAffx.31890.1.S1_at

Description tigr:9640.m02529
TID=OsAffx.31890.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2639011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26350OsAffx.31889.1.S1_at11/1112+15394827..15395429hypothetical protein
LOC_Os12g26360OsAffx.19837.1.S1_at1/1112+15397437..15397931hypothetical protein
LOC_Os12g26370NANA12+15402823..15405007retrotransposon protein, putative, unclassified
LOC_Os12g26380OsAffx.19837.1.S1_at11/1112+15409792..15410981dirigent protein, putative, expressed
LOC_Os12g26390OsAffx.31890.1.S1_at11/1112+15418872..15421109expressed protein
LOC_Os12g26400Os.46012.2.S1_x_at9/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26400Os.46012.3.S1_x_at7/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26400Os.27088.1.A1_x_at5/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26400Os.54691.1.S1_x_at1/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26410NANA12+15430246..15431777expressed protein
LOC_Os12g26420NANA12+15437658..15442097retrotransposon protein, putative, unclassified
LOC_Os12g26430OsAffx.31891.1.S1_at11/1112+15442818..15445127hypothetical protein
LOC_Os12g26430OsAffx.31891.1.S1_x_at11/1112+15442818..15445127hypothetical protein
LOC_Os12g26444NANA12+15445907..15450863retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31890.1.S1_at--1079--5091Chr12:15419726..15419750 (25 bp)
GCACTGGTGATGCTTTCTTCCAAAA
LOC_Os12g26390
OsAffx.31890.1.S1_at--280--3131Chr12:15419640..15419664 (25 bp)
AATTCTCCTAGACCGTGACAACATC
LOC_Os12g26390
OsAffx.31890.1.S1_at--623--2151Chr12:15419597..15419621 (25 bp)
ACAGCAGTAATTCTAGAGCGTCTAT
LOC_Os12g26390
OsAffx.31890.1.S1_at--220--5891Chr12:15419582..15419606 (25 bp)
GAGCGTCTATGTGCCAATTACACCG
LOC_Os12g26390
OsAffx.31890.1.S1_at--469--1871Chr12:15419554..15419578 (25 bp)
ACGATGAATGTCTCCAGAACCTGAA
LOC_Os12g26390
OsAffx.31890.1.S1_at--755--2351Chr12:15419208..15419230 (23 bp)
AAAGCTTTGTGTGACTATCTGTGAC
LOC_Os12g26390
OsAffx.31890.1.S1_at--834--2131Chr12:15419151..15419175 (25 bp)
ACAGTTCTATGCGACTTGCCATGGA
LOC_Os12g26390
OsAffx.31890.1.S1_at--5--2771Chr12:15419075..15419099 (25 bp)
AATGACCCTAAGGTCGACAGCCTTA
LOC_Os12g26390
OsAffx.31890.1.S1_at--362--2071Chr12:15418953..15418977 (25 bp)
ACTTGCTTCCAAGACCATGTCTGAC
LOC_Os12g26390
OsAffx.31890.1.S1_at--275--771Chr12:15418937..15418961 (25 bp)
ATGTCTGACATATCGACGGCTCTAT
LOC_Os12g26390
OsAffx.31890.1.S1_at--541--1931Chr12:15418922..15418946 (25 bp)
ACGGCTCTATGTTTCTCACCAGTGG
LOC_Os12g26390
Target Sequence 
GCACTGGTGATGCTTTCTTCCAAAATGGAAGGTAGTGCCATGATCATCATGAAAGCAAACAATAACTCTGTTGATAATCT
CGTAAAAATTCTCCTAGACCGTGACAACATCATATTGTTCAGAGTAGCTACAGCAGTAATTCTAGAGCGTCTATGTGCCA
ATTACACCGAAGACGATGAATGTCTCCAGAACCTGAAGGGAGTGATGACCAAGGCAATGCCAAAGCTTTGTGTGACTATC
TGTGACAAATTCACATTTTCATATCAAGATCTGAATCAACAGTTCTATGCGACTTGCCATGGAGTTGATAAATTTAGCGT
TTGGAGGAAGCTCAAGGAGATTGTAGAAACAAACAATGACCCTAAGGTCGACAGCCTTAGAATAGCTCAACACACCACTA
AGATGGTCATATCAATGATGAAAAATGAAGGCAGCTATGTGGATGAAGACTTGCAGAGCTTGATGCAGTCTCTGTCACTT
GCTTCCAAGACCATGTCTGACATATCGACGGCTCTATGTTTCTCACCAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis