Browse Element(s) Details


OsAffx.31891.1.S1_at

Description tigr:9640.m02533
TID=OsAffx.31891.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2643011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26390OsAffx.31890.1.S1_at11/1112+15418872..15421109expressed protein
LOC_Os12g26400Os.46012.2.S1_x_at9/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26400Os.46012.3.S1_x_at7/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26400Os.27088.1.A1_x_at5/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26400Os.54691.1.S1_x_at1/1112+15422432..15428045retrotransposon protein, putative, unclassified
LOC_Os12g26410NANA12+15430246..15431777expressed protein
LOC_Os12g26420NANA12+15437658..15442097retrotransposon protein, putative, unclassified
LOC_Os12g26430OsAffx.31891.1.S1_at11/1112+15442818..15445127hypothetical protein
LOC_Os12g26430OsAffx.31891.1.S1_x_at11/1112+15442818..15445127hypothetical protein
LOC_Os12g26444NANA12+15445907..15450863retrotransposon protein, putative, unclassified
LOC_Os12g26460NANA12+15455318..15456116hypothetical protein
LOC_Os12g26470OsAffx.19839.1.S1_at11/1112+15459154..15460562Eukaryotic aspartyl protease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31891.1.S1_at--1157--4771Chr12:15444601..15444625 (25 bp)
GCTGCCACGAAGAGCGCGGCGAGGT
LOC_Os12g26430
OsAffx.31891.1.S1_at--247--9171Chr12:15444665..15444689 (25 bp)
TGCCGACCGGAAGCATGGCCGTCGT
LOC_Os12g26430
OsAffx.31891.1.S1_at--142--7191Chr12:15444691..15444715 (25 bp)
GTCGTCGTTGGAGCGTGGACGTCGA
LOC_Os12g26430
OsAffx.31891.1.S1_at--616--5571Chr12:15444746..15444770 (25 bp)
GAAAGGTGGAGAGCGCCTGGCGCGC
LOC_Os12g26430
OsAffx.31891.1.S1_at--336--1251Chr12:15444917..15444941 (25 bp)
AGTTGGTGTAGGAAGCCGTGTCGTC
LOC_Os12g26430
OsAffx.31891.1.S1_at--685--7451Chr12:15444934..15444958 (25 bp)
GTGTCGTCGGCGGTTGCCATGGCGA
LOC_Os12g26430
OsAffx.31891.1.S1_at--228--4591Chr12:15444966..15444990 (25 bp)
GCGCAGCAGGCGTGCTACGGAAGGA
LOC_Os12g26430
OsAffx.31891.1.S1_at--734--1051Chr12:15445003..15445027 (25 bp)
AGGTGGATCGGGAGTCTGATACCAT
LOC_Os12g26430
OsAffx.31891.1.S1_at--981--9411Chr12:15445010..15445034 (25 bp)
TCGGGAGTCTGATACCATAAAAGGG
LOC_Os12g26430
OsAffx.31891.1.S1_at--25--8612Chr12:15445052..15445076 (25 bp)
TGGTGTATTGATCACGGAGATTTAC
LOC_Os12g26430
OsAffx.31891.1.S1_at--163--8052Chr12:15445067..15445091 (25 bp)
GGAGATTTACATATGTAGGCCTCAT
LOC_Os12g26430
Target Sequence 
GCTGCCACGAAGAGCGCGGCGAGGTCGACGGGTGTCGCGGGCTCGCCGGACGGTGGAGCCGAGGTGCCGACCGGAAGCAT
GGCCGTCGTGGTCGTCGTTGGAGCGTGGACGTCGACGGGCGGGGTCGGTGCTGGGAGAGACGCGAGAAAGGTGGAGAGCG
CCTGGCGCGCCGTGGCGGACGCCTTGGCCGCAGCGCCGTCGGCGACGATGGTGGCAGTGTCGGCGGCGATAGAGAGGCCA
TCGGGGGACTGGAACGCCGCGCGGACGGCGTTGGCAGCGGCGTCGGCGGCGGAGTCGAGAACAGCGGCGGTGGGGGAGTT
GGTGTAGGAAGCCGTGTCGTCGGCGGTTGCCATGGCGAGCGACGGGCGCAGCAGGCGTGCTACGGAAGGAAGAGAGCGGA
AGAGGTGGATCGGGAGTCTGATACCATAAAAGGGAATGGGACTCAACGCGATGGTGTATTGATCACGGAGATTTACATAT
GTAGGCCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31891.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis