Browse Element(s) Details


OsAffx.19839.1.S1_at

Description tigr:9640.m02536
TID=OsAffx.19839.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2647011/11Eukaryotic aspartyl protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26420NANA12+15437658..15442097retrotransposon protein, putative, unclassified
LOC_Os12g26430OsAffx.31891.1.S1_at11/1112+15442818..15445127hypothetical protein
LOC_Os12g26430OsAffx.31891.1.S1_x_at11/1112+15442818..15445127hypothetical protein
LOC_Os12g26444NANA12+15445907..15450863retrotransposon protein, putative, unclassified
LOC_Os12g26460NANA12+15455318..15456116hypothetical protein
LOC_Os12g26470OsAffx.19839.1.S1_at11/1112+15459154..15460562Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g26480Os.16414.1.S1_x_at11/1112+15470201..15472635expressed protein
LOC_Os12g26480OsAffx.29186.1.S1_at4/1112+15470201..15472635expressed protein
LOC_Os12g26490OsAffx.31892.1.S1_x_at1/1112+15481390..15483255hypothetical protein
LOC_Os12g26490OsAffx.31177.1.S1_at1/1112+15481390..15483255hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004194molecular_functionpepsin A activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19839.1.S1_at--769--8691Chr12:15459692..15459716 (25 bp)
TGTCGAGCACCCTGTACCCGGACTT
LOC_Os12g26470
OsAffx.19839.1.S1_at--674--4631Chr12:15459647..15459671 (25 bp)
GCGTACGCGTCGACGGCAACAGGCT
LOC_Os12g26470
OsAffx.19839.1.S1_at--164--7231Chr12:15459639..15459663 (25 bp)
GTCGACGGCAACAGGCTGGACGCCA
LOC_Os12g26470
OsAffx.19839.1.S1_at--571--1811Chr12:15459552..15459576 (25 bp)
ACGCCGGTGACGTACCTCGAGCAGG
LOC_Os12g26470
OsAffx.19839.1.S1_at--400--1771Chr12:15459446..15459470 (25 bp)
ACCTGTGCTACAACGCGTCGTCCAT
LOC_Os12g26470
OsAffx.19839.1.S1_at--876--8711Chr12:15459362..15459386 (25 bp)
TGTCGGCGGCGAACTACTTCTACAT
LOC_Os12g26470
OsAffx.19839.1.S1_at--964--511Chr12:15459339..15459363 (25 bp)
ATCGACAACGACACCGGGCTGGAGT
LOC_Os12g26470
OsAffx.19839.1.S1_at--761--8551Chr12:15459320..15459344 (25 bp)
TGGAGTGCCTCACCATGCTGCCATC
LOC_Os12g26470
OsAffx.19839.1.S1_at--166--5451Chr12:15459275..15459299 (25 bp)
GAACGCTGCTGCAGACGGGCACCAA
LOC_Os12g26470
OsAffx.19839.1.S1_at--364--3991Chr12:15459260..15459284 (25 bp)
CGGGCACCAACATGATCTACGACGT
LOC_Os12g26470
OsAffx.19839.1.S1_at--1144--1691Chr12:15459255..15459279 (25 bp)
ACCAACATGATCTACGACGTCGACG
LOC_Os12g26470
Target Sequence 
TGTCGAGCACCCTGTACCCGGACTTCTACTACGTCAACCTCACCGGCGTACGCGTCGACGGCAACAGGCTGGACGCCATT
CCGGCGGGGACGTTCGACCTGAGGGCCAACGGCACCGGCGGGGTGATCCTCAGCAGCACGACGCCGGTGACGTACCTCGA
GCAGGCGGCGTACGACGTCGTGAGGGCGGCGGTGGCGAGCAGGATCGGCCTGCCGGCCGTCAACGGCTCGGCGGCGCTGG
AGCTCGACCTGTGCTACAACGCGTCGTCCATGGCGAAGGTGAAGGTGCCGAAGCTGACGCTGGTGTTCGACGGCGGCGCC
GACATGGATCTGTCGGCGGCGAACTACTTCTACATCGACAACGACACCGGGCTGGAGTGCCTCACCATGCTGCCATCGCA
GGGCGGCTCGGTGCTGGGAACGCTGCTGCAGACGGGCACCAACATGATCTACGACGTCGACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19839.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis