Browse Element(s) Details


OsAffx.29186.1.S1_at

Description gb:NM_190446.1
DB_XREF= gi:34907975
GEN=P0446G04.20
TID=OsAffx.29186.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0446G04.20 (P0446G04.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1405011/11expressed protein
LOC_Os12g264804/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g13990Os.6596.1.S1_at1/118+8383043..8386420pentatricopeptide, putative, expressed
LOC_Os08g14000Os.48441.1.S1_at10/118+8387933..8391462Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14010OsAffx.9664.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14010Os.18665.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14020OsAffx.18899.1.S1_at7/118+8399646..8403479Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14030NANA8+8405726..8406156hypothetical protein
LOC_Os08g14040OsAffx.29185.1.S1_at10/118+8407411..8408267hypothetical protein
LOC_Os08g14050OsAffx.29186.1.S1_at11/118+8409098..8412222expressed protein
LOC_Os08g14050Os.16414.1.S1_x_at8/118+8409098..8412222expressed protein
LOC_Os08g14060Os.10419.1.S1_a_at9/118+8412912..8414034Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14070Os.39123.1.S1_at10/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14070Os.39123.2.S1_s_at4/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14080OsAffx.29187.1.S1_at11/118+8421463..8421925hypothetical protein
LOC_Os08g14090NANA8+8424759..8427052Dienelactone hydrolase family protein
LOC_Os08g14109Os.8582.1.S1_at11/118+8430980..8439573Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29186.1.S1_at--223--1811Chr08:8410122..8410146 (25 bp)
ACCCATTGATGGTAAGGCTTGCCAA
LOC_Os08g14050
OsAffx.29186.1.S1_at--966--9771Chr08:8410110..8410134 (25 bp)
TAAGGCTTGCCAACATGAAACATGT
LOC_Os08g14050
OsAffx.29186.1.S1_at--495--8792Chr12:15471215..15471239 (25 bp)
TGTTACTTAACATCTGCGATACAGC
LOC_Os12g26480
OsAffx.29186.1.S1_at--799--2092Chr12:15471206..15471230 (25 bp)
ACATCTGCGATACAGCTGGTAACTT
LOC_Os12g26480
OsAffx.29186.1.S1_at--682--2132Chr12:15471195..15471219 (25 bp)
ACAGCTGGTAACTTGTAGTTTTGCC
LOC_Os12g26480
OsAffx.29186.1.S1_at--252--10051Chr08:8410053..8410077 (25 bp)
TAGTTTTGCCTCCTCTATGTACTTA
LOC_Os08g14050
OsAffx.29186.1.S1_at--936--4451Chr08:8410046..8410070 (25 bp)
GCCTCCTCTATGTACTTATTAATTT
LOC_Os08g14050
OsAffx.29186.1.S1_at--653--7033Chr12:15471102..15471126 (25 bp)
GTAAATAAATTTCAGGCGCTTCAAT
LOC_Os12g26480
OsAffx.29186.1.S1_at--793--9631Chr08:8409964..8409988 (25 bp)
TCAGGCGCTTCAATCTGCGATGAAA
LOC_Os08g14050
OsAffx.29186.1.S1_at--1096--5551Chr08:8409943..8409967 (25 bp)
GAAAGCTAATGTTTTGCCTCCACGA
LOC_Os08g14050
OsAffx.29186.1.S1_at--45--3071Chr08:8409235..8409259 (25 bp)
AATCTACCTATGTGAAGGAGCAAAC
LOC_Os08g14050
Target Sequence 
ACCCATTGATGGTAAGGCTTGCCAACATGAAACATGTTACTTAACATCTGCGATACAGCTGGTAACTTGTAGTTTTGCCT
CCTCTATGTACTTATTAATTTTAAAATTCATCAACATGTATAAATTTAACTATTTGCATTGTCATGTGTAAATAAATTTC
AGGCGCTTCAATCTGCGATGAAAGCTAATGTTTTGCCTCCACGACCAGCGGCCCCAACATGCCCCACTGTCTATTTAGCC
ATCATCTAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCATCCAAACATCAAGATCTGGAACA
ATGATTTTTGGATGTAGTTCATGTTATTTTGGTCTTACCTATCCAATGGACTCCCAGATATTATTCAAGAACTGGTACTT
ATGATGTTCGAAAAAAATCTACCTATGTGAAGGAGCAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29186.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis