Browse Element(s) Details


Os.16414.1.S1_x_at

Description gb:AK068778.1
DB_XREF= gi:32978803
TID=Os.16414.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013158F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013158F09, full insert sequence.
FL= gb:AK068778.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2648011/11expressed protein
LOC_Os08g140508/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g26444NANA12+15445907..15450863retrotransposon protein, putative, unclassified
LOC_Os12g26460NANA12+15455318..15456116hypothetical protein
LOC_Os12g26470OsAffx.19839.1.S1_at11/1112+15459154..15460562Eukaryotic aspartyl protease family protein, expressed
LOC_Os12g26480Os.16414.1.S1_x_at11/1112+15470201..15472635expressed protein
LOC_Os12g26480OsAffx.29186.1.S1_at4/1112+15470201..15472635expressed protein
LOC_Os12g26490OsAffx.31892.1.S1_x_at1/1112+15481390..15483255hypothetical protein
LOC_Os12g26490OsAffx.31177.1.S1_at1/1112+15481390..15483255hypothetical protein
LOC_Os12g26500NANA12+15487076..15491568retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g26510Os.51010.1.S1_at3/1112+15496298..15496939expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16414.1.S1_x_at--302--8132Chr12:15471431..15471455 (25 bp)
GGACTATTGTACTGACCGTGTCAAG
LOC_Os12g26480
Os.16414.1.S1_x_at--586--1532Chr12:15471280..15471304 (25 bp)
AGCATGGTGCAAGTCCTGATTTGAT
LOC_Os12g26480
Os.16414.1.S1_x_at--343--9173Chr12:15470564..15471054 (25 bp)
TGCCCCACTGTCTATTTAGCCATCA
LOC_Os12g26480
Os.16414.1.S1_x_at--132--431Chr12:15470543..15470567 (25 bp)
ATCATCTAAGATCAAGTGCGTCCAA
LOC_Os12g26480
Os.16414.1.S1_x_at--64--2872Chr12:15470530..15470554 (25 bp)
AAGTGCGTCCAATTGCCAGCCATGA
LOC_Os12g26480
Os.16414.1.S1_x_at--104--4393Chr12:15470516..15470540 (25 bp)
GCCAGCCATGATTCATTGCTACAGA
LOC_Os12g26480
Os.16414.1.S1_x_at--538--6733Chr12:15470446..15470470 (25 bp)
GTTCATGTTATTTTGGTCCTACCTA
LOC_Os12g26480
Os.16414.1.S1_x_at--644--10832Chr12:15470434..15470458 (25 bp)
TTGGTCCTACCTATCCAATGGACTC
LOC_Os12g26480
Os.16414.1.S1_x_at--650--2953Chr12:15470418..15470442 (25 bp)
AATGGACTCCCAGATATTATTCAAG
LOC_Os12g26480
Os.16414.1.S1_x_at--766--3573Chr12:15470323..15470347 (25 bp)
CATAGATTGGTTGTGGCTGTTTGAA
LOC_Os12g26480
Os.16414.1.S1_x_at--171--4753Chr12:15470209..15470233 (25 bp)
GCTGAATATTTGAGTGCTTGTACCA
LOC_Os12g26480
Target Sequence 
GGACTATTGTACTGACCGTGTCAAGGATAAGCTTGAAGCTTATTTTGGAGTTGTTAAGGAAAAGCATGGTGCAAGTCCTG
ATTTGATGAAATAACCCATTGATGGNNNNNCNNNNNNNNNNNAANNNNNNNNNTNNNNNNCNACGACCAGCGGCCCCAAC
ATGCCCCACTGTCTATTTAGCCATCATCTAAGATCAAGTGCGTCCAATTGCCAGCCATGATTCATTGCTACAGAAATCCA
TCCAAACATCAAGATCTGGAACAATGATTTTTGGATGTAGTTCATGTTATTTTGGTCCTACCTATCCAATGGACTCCCAG
ATATTATTCAAGAACTGGTACTTATGATGTTNGAAAAAAATCNACCTATNTGAAGGAGCANACATTACTTTNGTGTGTAT
TCCATAGATTGGTTGTGGCTGTTTGAATATGTATGTGTGCAACTAAAACAAATATCTGGTATNAACATTTGTACAGATCA
GTTTATGCTTNGTACTTGCACTGATTGTATTACATTGCTGAATATTTGAGTGCTTGTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16414.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis