Browse Element(s) Details


OsAffx.31177.1.S1_at

Description tigr:9639.m02538
TID=OsAffx.31177.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2816010/11hypothetical protein
LOC_Os08g224001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g264901/11hypothetical protein
LOC_Os07g252301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28130Os.25910.1.S1_s_at11/1111+15661535..15662533expressed protein
LOC_Os11g28130Os.25910.1.S1_at11/1111+15661535..15662533expressed protein
LOC_Os11g28140OsAffx.10637.1.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.3.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.4.S1_s_at8/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28160OsAffx.31177.1.S1_at10/1111+15686749..15689228hypothetical protein
LOC_Os11g28160OsAffx.17842.1.S1_at1/1111+15686749..15689228hypothetical protein
LOC_Os11g28170OsAffx.19048.1.S1_at10/1111+15697431..15699022hypothetical protein
LOC_Os11g28200OsAffx.31178.1.S1_at11/1111+15704006..15714676expressed protein
LOC_Os11g28200Os.52413.1.S1_at10/1111+15704006..15714676expressed protein
LOC_Os11g28200OsAffx.22745.1.S1_x_at1/1111+15704006..15714676expressed protein
LOC_Os11g28184Os.52242.1.S1_at11/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10156.1.S1_x_at2/1111+15704150..15712338expressed protein
LOC_Os11g28184Os.52782.1.S1_at1/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10528.1.S1_x_at1/1111+15704150..15712338expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31177.1.S1_at--227--9772Chr11:15687337..15687361 (25 bp)
TAATCGCGTGCCCAATGATCCTTAT
LOC_Os11g28160
OsAffx.31177.1.S1_at--36--7571NONE
GGGCGTGATCAACAGAAGGTTTTCT
NONE
OsAffx.31177.1.S1_at--646--5311Chr11:15688146..15688170 (25 bp)
GAAGGTTTTCTCTAGTCAACGGGCA
LOC_Os11g28160
OsAffx.31177.1.S1_at--43--10391Chr11:15688151..15688175 (25 bp)
TTTTCTCTAGTCAACGGGCAAACGT
LOC_Os11g28160
OsAffx.31177.1.S1_at--427--1892Chr11:15688172..15688196 (25 bp)
ACGTTGCTAAGGAAGATGGCTACAT
LOC_Os11g28160
OsAffx.31177.1.S1_at--1012--2471Chr11:15688198..15688222 (25 bp)
AACACCTCCGATGTTGAAGATGATG
LOC_Os11g28160
OsAffx.31177.1.S1_at--736--2631Chr11:15688297..15688321 (25 bp)
AACCAAGCGCCTATAACTTTTGATG
LOC_Os11g28160
OsAffx.31177.1.S1_at--611--9895Chr12:15482883..15482903 (21 bp)
TACTCAAGGTGAAACCAAGGACGGT
LOC_Os12g26490
OsAffx.31177.1.S1_at--401--4371Chr11:15689013..15689037 (25 bp)
CCAAGGACGGTTTCCCATCAAGAAG
LOC_Os11g28160
OsAffx.31177.1.S1_at--137--6311Chr11:15689045..15689069 (25 bp)
GATGAGGACACAACTATCTTGGATA
LOC_Os11g28160
OsAffx.31177.1.S1_at--908--7931Chr11:15689065..15689089 (25 bp)
GGATATAACCAAAACTACCTTATGT
LOC_Os11g28160
Target Sequence 
TAATCGCGTGCCCAATGATCCTTATGCTAAGGACATAGTTGATAATAAGGAATTTAACATTGTCAACCAGTTGTTTCAGT
TTGCTATGCTTGAAGAGAAGGAATTGCAGGGGCGTGATCAACAGAAGGTTTTCTCTAGTCAACGGGCAAACGTTGCTAAG
GAAGATGGCTACATCAACACCTCCGATGTTGAAGATGATGAGAAGGAAGAGAAGAAAGACAAAGAGCAAAAAGACCTATC
CATAGCTCCATGCATGCTTGAGGAATGTTTAATTAACCAAGCGCCTATAACTTTTGATGATGAGAAAAAAGGTAATGATA
ATGGTGCTACAACTACTCAAGGTGAAACCAAGGACGGTTTCCCATCAAGAAGGGAGGATGATGAGGACACAACTATCTTG
GATATAACCAAAACTACCTTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31177.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis