Browse Element(s) Details


OsAffx.19048.1.S1_at

Description tigr:9639.m02539
TID=OsAffx.19048.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2817010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28140OsAffx.10637.1.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.3.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.4.S1_s_at8/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28160OsAffx.31177.1.S1_at10/1111+15686749..15689228hypothetical protein
LOC_Os11g28160OsAffx.17842.1.S1_at1/1111+15686749..15689228hypothetical protein
LOC_Os11g28170OsAffx.19048.1.S1_at10/1111+15697431..15699022hypothetical protein
LOC_Os11g28200OsAffx.31178.1.S1_at11/1111+15704006..15714676expressed protein
LOC_Os11g28200Os.52413.1.S1_at10/1111+15704006..15714676expressed protein
LOC_Os11g28200OsAffx.22745.1.S1_x_at1/1111+15704006..15714676expressed protein
LOC_Os11g28184Os.52242.1.S1_at11/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10156.1.S1_x_at2/1111+15704150..15712338expressed protein
LOC_Os11g28184Os.52782.1.S1_at1/1111+15704150..15712338expressed protein
LOC_Os11g28184OsAffx.10528.1.S1_x_at1/1111+15704150..15712338expressed protein
LOC_Os11g28210NANA11+15715875..15719213retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19048.1.S1_at--983--8511Chr11:15698930..15698954 (25 bp)
TGGACATGCCGGAGATTCGCCCGAT
LOC_Os11g28170
OsAffx.19048.1.S1_at--625--6051Chr11:15698919..15698943 (25 bp)
GAGATTCGCCCGATGGAGCTGCCGC
LOC_Os11g28170
OsAffx.19048.1.S1_at--442--3831NONE
CTGCCGCGTCCATGCTGAGGTGGAA
NONE
OsAffx.19048.1.S1_at--883--1051Chr11:15698756..15698780 (25 bp)
AGGTGGAAGATCCTCCCGTCGTCAG
LOC_Os11g28170
OsAffx.19048.1.S1_at--221--7191Chr11:15698720..15698744 (25 bp)
GTCGGCGATTGGACGGGCACCACCA
LOC_Os11g28170
OsAffx.19048.1.S1_at--760--3571Chr11:15698676..15698700 (25 bp)
CATATCGCGTGGTCAGGTGGCACCC
LOC_Os11g28170
OsAffx.19048.1.S1_at--490--7531Chr11:15698660..15698684 (25 bp)
GTGGCACCCCAGGAAGTCGGCTATA
LOC_Os11g28170
OsAffx.19048.1.S1_at--686--5391Chr11:15698605..15698629 (25 bp)
GAAGCAGGACTCGTGCTCGCAGGAA
LOC_Os11g28170
OsAffx.19048.1.S1_at--962--671Chr11:15698581..15698605 (25 bp)
ATGACGGACAGCCATACTTGTGGTT
LOC_Os11g28170
OsAffx.19048.1.S1_at--696--10151Chr11:15697514..15697534 (21 bp)
TATAAGGAAGTTGCGCTCGTCGATA
LOC_Os11g28170
OsAffx.19048.1.S1_at--413--3791Chr11:15697499..15697523 (25 bp)
CTCGTCGATAGCATTTCTGGGATTA
LOC_Os11g28170
Target Sequence
TGGACATGCCGGAGATTCGCCCGATGGAGCTGCCGCGTCCATGCTGAGGTGGAAGATCCTCCCGTCGTCAGCGCAAAGGA
TGGTCGGCGATTGGACGGGCACCACCACCGCCGAGGGGGCCCCTGCCATATCGCGTGGTCAGGTGGCACCCCAGGAAGTC
GGCTATAGGCGGAGAAGCTGCAGCGGCAGATCGGGCAGAAGCAGGACTCGTGCTCGCAGGAATGACGGACAGCCATACTT
GTGGTTCTTGCAAGAGATGGGGAAGGAAGAATATAAGGAAGTTGCGCTCGTCGATAGCATTTCTGGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis