Browse Element(s) Details


Os.39123.1.S1_at

Description gb:AK062875.1
DB_XREF= gi:32972893
TID=Os.39123.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.39123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative CGI-203 homolog (OSJNBa0060A14.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-108-C11, full insert sequence.
FL= gb:AK062875.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1407010/11complex 1 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14010OsAffx.9664.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14010Os.18665.1.S1_at1/118+8396530..8398375retrotransposon protein, putative, unclassified
LOC_Os08g14020OsAffx.18899.1.S1_at7/118+8399646..8403479Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14030NANA8+8405726..8406156hypothetical protein
LOC_Os08g14040OsAffx.29185.1.S1_at10/118+8407411..8408267hypothetical protein
LOC_Os08g14050OsAffx.29186.1.S1_at11/118+8409098..8412222expressed protein
LOC_Os08g14050Os.16414.1.S1_x_at8/118+8409098..8412222expressed protein
LOC_Os08g14060Os.10419.1.S1_a_at9/118+8412912..8414034Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14070Os.39123.1.S1_at10/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14070Os.39123.2.S1_s_at4/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14080OsAffx.29187.1.S1_at11/118+8421463..8421925hypothetical protein
LOC_Os08g14090NANA8+8424759..8427052Dienelactone hydrolase family protein
LOC_Os08g14109Os.8582.1.S1_at11/118+8430980..8439573Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14130OsAffx.29188.1.S1_at10/118+8442291..8443326hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39123.1.S1_at--228--6391Chr08:8418371..8418395 (25 bp)
GATCGACGCGAGAGGTTTCGTGCTC
LOC_Os08g14070
Os.39123.1.S1_at--432--10731Chr08:8418398..8418422 (25 bp)
TTGCTTGCTGTCCTCTTACTCAGGA
LOC_Os08g14070
Os.39123.1.S1_at--10--10491Chr08:8418413..8418437 (25 bp)
TTACTCAGGATTTCTTTCTGCTCTG
LOC_Os08g14070
Os.39123.1.S1_at--491--10591Chr08:8418428..8418452 (25 bp)
TTCTGCTCTGTTTCTAAAGTTATGT
LOC_Os08g14070
Os.39123.1.S1_at--442--7071Chr08:8418549..8418573 (25 bp)
GTCAATTCCACGATTTTGGTCTCTT
LOC_Os08g14070
Os.39123.1.S1_at--348--31Chr08:8418610..8418634 (25 bp)
ATTGGTGCCGATTGCAGCACTTCGA
LOC_Os08g14070
Os.39123.1.S1_at--1160--6031Chr08:8418774..8418798 (25 bp)
GAGATCTAGTGCATCTGTTCTGAAT
LOC_Os08g14070
Os.39123.1.S1_at--481--1931Chr08:8418807..8418831 (25 bp)
ACGGTTCATGTGTCCTGTATTGTTC
LOC_Os08g14070
Os.39123.1.S1_at--515--6871Chr08:8418823..8418847 (25 bp)
GTATTGTTCTATGCTATGTGTTCCC
LOC_Os08g14070
Os.39123.1.S1_at--550--4871Chr08:8418867..8418891 (25 bp)
GCTATGACATTGTTGCTGCTCTGAT
LOC_Os08g14070
Os.39123.1.S1_at--279--4931Chr08:8418922..8418946 (25 bp)
GCTTGCTAGTATTTGCTTTTTGGGC
NONE
Target Sequence 
GATCGACGCGAGAGGTTTCGTGCTCTCTTGCTTGCTGTCCTCTTACTCAGGATTTCTTTCTGCTCTGTTTCTAAAGTTAT
GTGATAGGTTCGAGGAAAATTGGTGCAATCAAAGCTGAGATGTTATCATGTTTGCTGGATAATTGCCATGACATGGTTGC
TATGAGTTGAATAAATCAGTCAATTCCACGATTTTGGTCTCTTGTGTTCAACATACCATTACCTGTTAACTGTGGTTGGA
TTGGTGCCGATTGCAGCACTTCGACCAGGGCTCCTCGTTGCTGCTGGGGTCCCTCGTCCTGTTGCCGGCTTGCAGCCACC
AGTCACCGTTGCTGGTGGTGGTGCCTTGTACCTGCTGCTCTCCGTCCTGATGGCCATGGCCTTCGTCCCACTGGACGAGC
TAAGAGATCTAGTGCATCTGTTCTGAATTTTTCAGGACGGTTCATGTGTCCTGTATTGTTCTATGCTATGTGTTCCCATT
TTTGTTTTTGTTGTATGCTATGACATTGTTGCTGCTCTGATCTTTTTTTTTTTCTGAAATAATGAAGATAAGCTTGCTAG
TATTTGCTTTTTGGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis