Browse Element(s) Details


Os.8582.1.S1_at

Description gb:AK059753.1
DB_XREF= gi:32969771
TID=Os.8582.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8582 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-203-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-203-B07, full insert sequence.
FL= gb:AK059753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1410911/11Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14030NANA8+8405726..8406156hypothetical protein
LOC_Os08g14040OsAffx.29185.1.S1_at10/118+8407411..8408267hypothetical protein
LOC_Os08g14050OsAffx.29186.1.S1_at11/118+8409098..8412222expressed protein
LOC_Os08g14050Os.16414.1.S1_x_at8/118+8409098..8412222expressed protein
LOC_Os08g14060Os.10419.1.S1_a_at9/118+8412912..8414034Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14070Os.39123.1.S1_at10/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14070Os.39123.2.S1_s_at4/118+8418100..8418930complex 1 family protein, putative, expressed
LOC_Os08g14080OsAffx.29187.1.S1_at11/118+8421463..8421925hypothetical protein
LOC_Os08g14090NANA8+8424759..8427052Dienelactone hydrolase family protein
LOC_Os08g14109Os.8582.1.S1_at11/118+8430980..8439573Endo-1,3;1,4-beta-D-glucanase precursor, putative, expressed
LOC_Os08g14130OsAffx.29188.1.S1_at10/118+8442291..8443326hypothetical protein
LOC_Os08g14140NANA8+8445317..8445571hypothetical protein
LOC_Os08g14150NANA8+8448698..8449196hypothetical protein
LOC_Os08g14160NANA8+8449458..8449712hypothetical protein
LOC_Os08g14170NANA8+8453627..8457433retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14180OsAffx.29191.1.S1_at11/118+8458570..8463167Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8582.1.S1_at--1147--4051Chr08:8437944..8437968 (25 bp)
CGAGGTTGAAGCAATTGTCATCTCC
LOC_Os08g14109
Os.8582.1.S1_at--257--10471Chr08:8438163..8438187 (25 bp)
TTACCAGTTTGTTCATGCCTTGCGT
LOC_Os08g14109
Os.8582.1.S1_at--1086--6531Chr08:8439140..8439164 (25 bp)
GATTATTTTGCCAAGGTCTTTCAAG
LOC_Os08g14109
Os.8582.1.S1_at--1073--1491Chr08:8439232..8439256 (25 bp)
AGCACTTGCGTTAATGCTTGACTGG
LOC_Os08g14109
Os.8582.1.S1_at--594--10491Chr08:8439288..8439312 (25 bp)
TTAATCATGCTAGGAAGACCAGTGC
LOC_Os08g14109
Os.8582.1.S1_at--1089--1331Chr08:8439303..8439327 (25 bp)
AGACCAGTGCAATTATTTCATCGAA
LOC_Os08g14109
Os.8582.1.S1_at--585--5571Chr08:8439325..8439349 (25 bp)
GAAATAAAACTCTCGTTCTCGATAT
LOC_Os08g14109
Os.8582.1.S1_at--252--2331Chr08:8439351..8439375 (25 bp)
AAAGTTTGCATATCAAGCAGCCATG
LOC_Os08g14109
Os.8582.1.S1_at--24--5091Chr08:8439367..8439391 (25 bp)
GCAGCCATGCATTTGATGTACACTA
LOC_Os08g14109
Os.8582.1.S1_at--106--10191Chr08:8439465..8439489 (25 bp)
TATACGGATGTACTTGTGCCATTGA
LOC_Os08g14109
Os.8582.1.S1_at--138--3611Chr08:8439484..8439508 (25 bp)
CATTGATGTTCATTGCTGGCTATAA
LOC_Os08g14109
Target Sequence 
CGAGGTTGAAGCAATTGTCATCTCCCATCCTGCAGCGGTGACTGCTGATGACATGAAAGAGGTCAAATGGCCCATTGAGA
TCCTTGGAGCTCAGAATGACACAGTTACACCACCAAGATTAGTTTACCAGTTTGTTCATGCCTTGCGTCAAAGAACTGAT
CAGATTGATTATTTTGCCAAGGTCTTTCAAGGAGTGAACCATNGNTTCGCTTGCAGGTATAACGCCAGCANCCCTTTNCG
AGGTCAAAAAAGCTGAGCAAGCACTTGCGTTAATGCTTGACTGGTTTCACAAACACTTGAAATGAAGATTGCTAATTAAT
CATGCTAGGAAGACCAGTGCAATTATTTCATCGAAATAAAACTCTCGTTCTCGATATAAAAGTTTGCATATCAAGCAGCC
ATGCATTTGATGTACACTATTTTCTTTAAATTATATGGAGTGAATTAATAGTATGTTGTCGAGTTGATGTTCGTTATTTA
TCTATAAATAATTATACGGATGTACTTGTGCCATTGATGTTCATTGCTGGCTATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8582.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis