Browse Element(s) Details


OsAffx.31929.1.S1_at

Description tigr:9640.m02854
TID=OsAffx.31929.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to polygalacturonase inhibitor protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2961010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g29590OsAffx.7737.1.S1_at10/1112+17649594..17650435hypothetical protein
LOC_Os12g29600NANA12+17652550..17653342retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g29610OsAffx.31929.1.S1_at10/1112+17655409..17659727hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_x_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31930.1.S1_at11/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.31931.1.S1_x_at2/1112+17662524..17664058hypothetical protein
LOC_Os12g29620OsAffx.7292.1.S1_x_at1/1112+17662524..17664058hypothetical protein
LOC_Os12g29630OsAffx.23366.2.S1_s_at1/1112+17665149..17668715transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640Os.46314.3.S1_at2/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29640OsAffx.7362.1.S1_x_at1/1112+17670317..17673638transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g29650OsAffx.31931.1.S1_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31931.1.S1_x_at11/1112+17674737..17676629hypothetical protein
LOC_Os12g29650OsAffx.31930.1.S1_x_at1/1112+17674737..17676629hypothetical protein
LOC_Os12g29660Os.27674.1.S1_at11/1112+17678736..17688870DEAD/DEAH box helicase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31929.1.S1_at--1059--9451Chr12:17657534..17657558 (25 bp)
TCGGCCTTGGTCTCTCAAGGGTGAC
LOC_Os12g29610
OsAffx.31929.1.S1_at--518--2891Chr12:17657521..17657542 (22 bp)
AAGGGTGACGCCACTTCAACAATCG
LOC_Os12g29610
OsAffx.31929.1.S1_at--1046--1251Chr12:17656337..17656361 (25 bp)
AGATATCAGGCGTCCCTCAACTTAC
LOC_Os12g29610
OsAffx.31929.1.S1_at--327--3751NONE
CTCAACTTACCAAACCGCTGCAAGT
NONE
OsAffx.31929.1.S1_at--48--2871Chr12:17655764..17655788 (25 bp)
AAGTGGAGGCGTACCTGACGCTGTC
LOC_Os12g29610
OsAffx.31929.1.S1_at--792--9331Chr12:17655689..17655713 (25 bp)
TCGCGCGCATCGACCTGTTGCGGAA
LOC_Os12g29610
OsAffx.31929.1.S1_at--357--8731Chr12:17655674..17655698 (25 bp)
TGTTGCGGAACCAGCCGACCGGCGA
LOC_Os12g29610
OsAffx.31929.1.S1_at--933--9191Chr12:17655560..17655584 (25 bp)
TGCCAGAGCAGGTGACCACCGTGGT
LOC_Os12g29610
OsAffx.31929.1.S1_at--984--8591Chr12:17655539..17655563 (25 bp)
TGGTCCGTGGACGTGAGTCACAACA
LOC_Os12g29610
OsAffx.31929.1.S1_at--486--1531Chr12:17655476..17655500 (25 bp)
AGCAGGCTGCAAGTGTTCAACGTCC
LOC_Os12g29610
OsAffx.31929.1.S1_at--1142--5171Chr12:17655468..17655492 (25 bp)
GCAAGTGTTCAACGTCCTGGACGAC
LOC_Os12g29610
Target Sequence 
TCGGCCTTGGTCTCTCAAGGGTGACGCCACTTCAACAATCGTGGCAGATTTGGGTGGTTTTGGATTATAACCTGACAAAG
GCAGCAGCTATTGAAAAAGTACACCGAAGGTCCCTCAACTTGTCATCGAGTTACAAAATCGTCCCCCAACCGCAAAACCA
GATATCAGGCGTCCCTCAACTTACCAAACCGCTGCAAGTGGAGGCGTACCTGACGCTGTCGCACAACAACCTCTCCAGGA
GCATCCCGGCGGAGTTCGCCGCTGTCAACTTCGCGCGCATCGACCTGTTGCGGAACCAGCCGACCGGCGACGCGTCGCCG
CTGTTCGGGCGAGGGAAGCCGGCGCAGGCCATCGACGTGTCGCGCAACGCGTTGGAGTTCGAGCTGACCGGCGTGGAGCT
GCCAGAGCAGGTGACCACCGTGGTCCGTGGACGTGAGTCACAACATGATCTACGGCGGCATCCCGACGCAGGCGGCGAAG
CTGAGCAGGCTGCAAGTGTTCAACGTCCTGGACGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31929.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis