Browse Element(s) Details


OsAffx.31993.1.S1_at

Description tigr:9640.m03197
TID=OsAffx.31993.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome p450 71e1 (ec 1.14.13.68) (4-hydroxyphenylacetaldehyde oxime monooxygenase). (sorghum, sorghum vulgare
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3285011/11Cytochrome P450 71E1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32800OsAffx.22145.1.S1_x_at1/1112+19785197..19796040retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g32810NANA12+19797561..19798097hypothetical protein
LOC_Os12g32820Os.49696.1.S1_at11/1112+19804196..19808546PDR-like ABC transporter, putative, expressed
LOC_Os12g32840OsAffx.31992.1.S1_at11/1112+19819131..19819800hypothetical protein
LOC_Os12g32850OsAffx.31993.1.S1_at11/1112+19820535..19822905Cytochrome P450 71E1, putative
LOC_Os12g32870OsAffx.31994.1.S1_at11/1112+19836837..19839307hypothetical protein
LOC_Os12g32880OsAffx.31995.1.S1_at11/1112+19842756..19844036hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31993.1.S1_at--883--2591Chr12:19821107..19821131 (25 bp)
AACGCAGCGACGATATTGTGGGCAA
LOC_Os12g32850
OsAffx.31993.1.S1_at--448--6311Chr12:19820993..19821017 (25 bp)
GATGACATTACGAAGCTCAGCTACC
LOC_Os12g32850
OsAffx.31993.1.S1_at--555--4131Chr12:19820923..19820947 (25 bp)
CGCTGCTACTACCAAGAGAGACCAT
LOC_Os12g32850
OsAffx.31993.1.S1_at--1007--611Chr12:19820900..19820924 (25 bp)
ATGCGGCACATCCAGATCAGCGGGT
LOC_Os12g32850
OsAffx.31993.1.S1_at--1105--9651Chr12:19820884..19820908 (25 bp)
TCAGCGGGTACGATGTGCCGGCCAA
LOC_Os12g32850
OsAffx.31993.1.S1_at--381--4131Chr12:19820857..19820881 (25 bp)
CGCGGATCTACGTCAATGCATGGGC
LOC_Os12g32850
OsAffx.31993.1.S1_at--339--6751Chr12:19820790..19820814 (25 bp)
GTTCAACCCCGAGAGGTTCGAGGCA
LOC_Os12g32850
OsAffx.31993.1.S1_at--718--551Chr12:19820740..19820764 (25 bp)
ATCCTGAGCTGATGCCATTTGGCAC
LOC_Os12g32850
OsAffx.31993.1.S1_at--578--4391Chr12:19820678..19820702 (25 bp)
GCCAATGTTGAATTTACGCTCGCCA
LOC_Os12g32850
OsAffx.31993.1.S1_at--1001--8091Chr12:19820617..19820641 (25 bp)
GGACGACGCCGGACAATGTGTGCCT
LOC_Os12g32850
OsAffx.31993.1.S1_at--48--2891Chr12:19820584..19820608 (25 bp)
AAGGGAGGCTTGTCTGTCACCGCAA
LOC_Os12g32850
Target Sequence 
AACGCAGCGACGATATTGTGGGCAATGTCGGAGCTGGCCCGGAAGCCGCGGGTGCTGAAGAAGGTGCAGGCGGAGATCAG
GGCTGCGGTGGGTGTAAACGGGAGGGTGCAACCTGATGACATTACGAAGCTCAGCTACCTTAGGAAGGTCGTGAAGGAGA
CCCTGCGGCTGCACCCGCCTACCCCGCTGCTACTACCAAGAGAGACCATGCGGCACATCCAGATCAGCGGGTACGATGTG
CCGGCCAAGACGCGGATCTACGTCAATGCATGGGCGATCGGTAGAGATCCGGCGAGCTGGCCCGATGAGCCGGAGGAGTT
CAACCCCGAGAGGTTCGAGGCAAACGAGATAGACTTCAAGGGGGAACATCCTGAGCTGATGCCATTTGGCACTGGGCGGC
GGATATGCCCAGGCATGGCCATGGCCATGGCCAATGTTGAATTTACGCTCGCCAATCTGCTCTTCGCCTTCCAGTGGTCA
CTCCCGGAGGGGACGACGCCGGACAATGTGTGCCTGGAGGAAGAAGGGAGGCTTGTCTGTCACCGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31993.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis