Browse Element(s) Details


OsAffx.32023.1.S1_at

Description gb:NM_196616.1
DB_XREF= gi:37534591
TID=OsAffx.32023.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative glycine-rich RNA-binding protein (OSJNBa0073D04.28), mRNA.
PROD=putative glycine-rich RNA-binding protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0557011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g2940011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g1049010/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g425109/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g05520NANA4+2774541..2780696transposon protein, putative, unclassified
LOC_Os04g05530NANA4+2781332..2784567transposon protein, putative, unclassified
LOC_Os04g05540OsAffx.7633.1.S1_at1/114+2786787..2788482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g05550OsAffx.3727.1.S1_at11/114+2789616..2790100hypothetical protein
LOC_Os04g05550OsAffx.25888.2.S1_x_at1/114+2789616..2790100hypothetical protein
LOC_Os04g05560OsAffx.25876.1.S1_at11/114+2796189..2798730Protein kinase domain containing protein
LOC_Os04g05570OsAffx.32023.1.S1_at11/114+2805543..2809038transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05580Os.54167.1.S1_at11/114+2813295..2817621Protein kinase domain containing protein, expressed
LOC_Os04g05590OsAffx.25936.7.S1_s_at7/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05590OsAffx.25936.1.S1_s_at6/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05590OsAffx.25936.2.S1_x_at4/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g05590OsAffx.25936.5.S1_x_at2/114+2830883..2833921transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32023.1.S1_at--276--6934Chr10:14948318..14948342 (25 bp)
GTAGAGTTATATTTGCCGATGCCGG
LOC_Os10g29400
OsAffx.32023.1.S1_at--90--3973Chr10:14948340..14948364 (25 bp)
CGGATGGCCAGGATCAGTGCATGAC
LOC_Os10g29400
OsAffx.32023.1.S1_at--451--1853Chr10:14948378..14948402 (25 bp)
ACGAAGCTATTGACTCTTATCCAGA
LOC_Os10g29400
OsAffx.32023.1.S1_at--65--3434Chr10:14948399..14948423 (25 bp)
CAGAGGAGTTTCCAAGACTACCTTT
LOC_Os10g29400
OsAffx.32023.1.S1_at--882--2434Chr10:14948512..14948536 (25 bp)
AAAATATCTTCTTGTTGACTCCGGA
LOC_Os10g29400
OsAffx.32023.1.S1_at--684--1194Chr10:14948543..14948567 (25 bp)
AGTAGGATGGGCTTCCTGGCACCGT
LOC_Os10g29400
OsAffx.32023.1.S1_at--454--7433Chr10:14948574..14948598 (25 bp)
GTGTACGGTACCACAAGGATCAATT
LOC_Os10g29400
OsAffx.32023.1.S1_at--360--34Chr10:14948767..14948791 (25 bp)
ATTGGCAGCGTTTTGTTTGCACAAC
LOC_Os10g29400
OsAffx.32023.1.S1_at--406--6854Chr10:14948781..14948805 (25 bp)
GTTTGCACAACTTCCGAATCGACAG
LOC_Os10g29400
OsAffx.32023.1.S1_at--1054--874Chr10:14948823..14948847 (25 bp)
AGGCCAATAACCCTCTGTATAATGG
LOC_Os10g29400
OsAffx.32023.1.S1_at--255--10594Chr10:14948876..14948900 (25 bp)
TTCTCCAATATGTATTACGCCGGCA
LOC_Os10g29400
Target Sequence 
GTAGAGTTATATTTGCCGATGCCGGATGGCCAGGATCAGTGCATGACAATCGAGTCCTAAACGAAGCTATTGACTCTTAT
CCAGAGGAGTTTCCAAGACTACCTTTTCGAAAATATCTTCTTGTTGACTCCGGATATCCGAGTAGGATGGGCTTCCTGGC
ACCGTACCCACGTGTACGGTACCACAAGGATCAATTCAAGGGGCCACGCGCTCCACCGCCAGAAGGAAGGGAAGAGAAGT
TCAACTACATACATGCCAAGCTGCGTAATATAATTGAGAGGCAATTTGGAATTGTGAAAAAACAGTGGAAAATCTTAAAA
GGCATACCGTACAACCCATATAAGAATGTCCAGAGCGACATAATATTGGCAGCGTTTTGTTTGCACAACTTCCGAATCGA
CAGCAAGCAAAATGACTACCAGGCCAATAACCCTCTGTATAATGGTAATCCTATAGCACCAATGGCACCCCCCTTCTCCA
ATATGTATTACGCCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32023.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis