Browse Element(s) Details


OsAffx.32032.2.S1_at

Description tigr:9639.m03431
TID=OsAffx.32032.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3785011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g37810NANA11+21892814..21893353hypothetical protein
LOC_Os11g37820NANA11+21895539..21901684retrotransposon protein, putative, unclassified
LOC_Os11g37830NANA11+21902319..21905509retrotransposon protein, putative, unclassified
LOC_Os11g37840OsAffx.25517.1.S1_at11/1111+21912179..21912912hypothetical protein
LOC_Os11g37850OsAffx.32032.2.S1_at11/1111+21917945..21923545NB-ARC domain containing protein, expressed
LOC_Os11g37850OsAffx.32032.5.S1_at3/1111+21917945..21923545NB-ARC domain containing protein, expressed
LOC_Os11g37860Os.52375.1.S1_at11/1111+21926451..21934084NB-ARC domain containing protein, expressed
LOC_Os11g37870OsAffx.31355.1.S1_at11/1111+21940924..21944070NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32032.2.S1_at--45--8071Chr11:21921089..21921113 (25 bp)
GGAGACACGAGACCTGGACGTCCTT
LOC_Os11g37850
OsAffx.32032.2.S1_at--942--8111Chr11:21921104..21921128 (25 bp)
GGACGTCCTTGCAATGATGCCGGCA
LOC_Os11g37850
OsAffx.32032.2.S1_at--479--2631Chr11:21921198..21921222 (25 bp)
AACCTGAGATACTGCGACACGAACA
LOC_Os11g37850
OsAffx.32032.2.S1_at--50--5491Chr11:21921218..21921242 (25 bp)
GAACATAGAACTCACCTTCCTTCAA
LOC_Os11g37850
OsAffx.32032.2.S1_at--700--3631Chr11:21921233..21921257 (25 bp)
CTTCCTTCAAGGAGCGATGCCGATG
LOC_Os11g37850
OsAffx.32032.2.S1_at--489--4511Chr11:21921251..21921275 (25 bp)
GCCGATGCTTCTGGATGTTGTTTTG
LOC_Os11g37850
OsAffx.32032.2.S1_at--713--6631Chr11:21921267..21921291 (25 bp)
GTTGTTTTGATCGTGCGCGGATCTA
LOC_Os11g37850
OsAffx.32032.2.S1_at--934--6291Chr11:21921294..21921318 (25 bp)
GATGATCCTGCTAACAATGTTGGCT
LOC_Os11g37850
OsAffx.32032.2.S1_at--141--2851Chr11:21921343..21921367 (25 bp)
AAGTCCTTATTCTGCTCAATTGCGA
LOC_Os11g37850
OsAffx.32032.2.S1_at--367--7731Chr11:21921401..21921425 (25 bp)
GGTGGCATGGGAGCATACCGTCCAT
LOC_Os11g37850
OsAffx.32032.2.S1_at--805--3451Chr11:21921442..21921466 (25 bp)
CAGTCATTTCTGTGCACCGATTTGG
LOC_Os11g37850
Target Sequence 
GGAGACACGAGACCTGGACGTCCTTGCAATGATGCCGGCACTCTGCTTCCTCCGCATAGACGTCAAGGAGAGATTTTCGT
GGACAGTCGGTGGCGGCGGATCATTCCCAAACCTGAGATACTGCGACACGAACATAGAACTCACCTTCCTTCAAGGAGCG
ATGCCGATGCTTCTGGATGTTGTTTTGATCGTGCGCGGATCTAGGGATGATCCTGCTAACAATGTTGGCTTGGGGAATCT
CCCACTGCTCAAGAAAGTCCTTATTCTGCTCAATTGCGAAGGTGAGACGGCCAAGCAGGTTGAAGAAGTGGTGGTGGCAT
GGGAGCATACCGTCCATGCTCACCCCAACCGTCCAGTCATTTCTGTGCACCGATTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32032.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis