Browse Element(s) Details


OsAffx.32069.1.S1_at

Description tigr:9640.m03638
TID=OsAffx.32069.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=acetyltransferase, GNAT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3749011/11acetyltransferase, GNAT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37440NANA12+22946801..22948797hypothetical protein
LOC_Os12g37450NANA12+22951098..22954310transposon protein, putative, unclassified
LOC_Os12g37460NANA12+22954954..22961109transposon protein, putative, unclassified
LOC_Os12g37470NANA12+22962177..22964983Zinc knuckle family protein
LOC_Os12g37480OsAffx.32068.1.S1_at11/1112+22966329..22967412pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g37490OsAffx.32069.1.S1_at11/1112+22968670..22970722acetyltransferase, GNAT family protein
LOC_Os12g37500NANA12+22977001..22980420retrotransposon protein, putative, LINE subclass
LOC_Os12g37510Os.27695.1.S1_at11/1112+22982283..22984116UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os12g37520OsAffx.7821.1.S1_x_at11/1112+22994395..22994844hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0009640biological_processphotomorphogenesis
GO:0009723biological_processresponse to ethylene stimulus
GO:0009734biological_processauxin mediated signaling pathway
GO:0009826biological_processunidimensional cell growth
GO:0008080molecular_functionN-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32069.1.S1_at--210--4311Chr12:22969195..22969219 (25 bp)
CCTAGGCACGTGGATGGCGCGCTTC
LOC_Os12g37490
OsAffx.32069.1.S1_at--415--8651Chr12:22969118..22969142 (25 bp)
TGTGGAACACGTGCGCGTCGTACAG
LOC_Os12g37490
OsAffx.32069.1.S1_at--592--7491Chr12:22969006..22969030 (25 bp)
GTGGTGCTTGGCTGCCATTTACCAA
LOC_Os12g37490
OsAffx.32069.1.S1_at--765--9191Chr12:22968994..22969018 (25 bp)
TGCCATTTACCAAGCGCGCGAATTC
LOC_Os12g37490
OsAffx.32069.1.S1_at--389--4571Chr12:22968981..22969005 (25 bp)
GCGCGCGAATTCAAGTTCCTTTCAA
LOC_Os12g37490
OsAffx.32069.1.S1_at--410--9351Chr12:22968960..22968984 (25 bp)
TCAAATTTGCCGTGGATTCCGTGTA
LOC_Os12g37490
OsAffx.32069.1.S1_at--406--6811Chr12:22968927..22968951 (25 bp)
GTTTTTTCTGAATTTACCACGATAT
LOC_Os12g37490
OsAffx.32069.1.S1_at--662--131Chr12:22968884..22968908 (25 bp)
ATTCAAATTCCTTATGTGTCCATCT
LOC_Os12g37490
OsAffx.32069.1.S1_at--1046--431Chr12:22968863..22968887 (25 bp)
ATCTTCTTTGGCTAGGCTCAACTGA
LOC_Os12g37490
OsAffx.32069.1.S1_at--602--8311Chr12:22968849..22968873 (25 bp)
GGCTCAACTGAAGTGATTGGTCTTT
LOC_Os12g37490
OsAffx.32069.1.S1_at--303--10851Chr12:22968707..22968857 (25 bp)
TTGGTCTTTGGCCAGATTTTGACGC
LOC_Os12g37490
Target Sequence 
CCTAGGCACGTGGATGGCGCGCTTCGCCGGCGGCGGCGGCGGCGACGGCGGCGACGGCGCGTGGGCGTGCGTGAGCCTGT
GGAACACGTGCGCGTCGTACAGGCTGCAGGTGGTGGCGCCGCCGCCGAGGCCGGCGGGCGGCGGCAGGGCGCTCCTGGCG
CGGCTGGCCGCCGTGGCGCCGACGCCGCCGTGGTGCTTGGCTGCCATTTACCAAGCGCGCGAATTCAAGTTCCTTTCAAA
TTTGCCGTGGATTCCGTGTAATTTGCTGGTTTTTTCTGAATTTACCACGATATTGATCCAAATATCCTTGAATTCAAATT
CCTTATGTGTCCATCTTCTTTGGCTAGGCTCAACTGAAGTGATTGGTCTTTGGCCAGATTTTGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32069.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis