Browse Element(s) Details


Os.27695.1.S1_at

Description gb:AK121202.1
DB_XREF= gi:37990825
TID=Os.27695.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023087K24, full insert sequence.
FL= gb:AK121202.1 gb:AK060965.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3751011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37460NANA12+22954954..22961109transposon protein, putative, unclassified
LOC_Os12g37470NANA12+22962177..22964983Zinc knuckle family protein
LOC_Os12g37480OsAffx.32068.1.S1_at11/1112+22966329..22967412pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g37490OsAffx.32069.1.S1_at11/1112+22968670..22970722acetyltransferase, GNAT family protein
LOC_Os12g37500NANA12+22977001..22980420retrotransposon protein, putative, LINE subclass
LOC_Os12g37510Os.27695.1.S1_at11/1112+22982283..22984116UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os12g37520OsAffx.7821.1.S1_x_at11/1112+22994395..22994844hypothetical protein
LOC_Os12g37530Os.8465.1.S1_a_at11/1112+22997410..23001992flagellar biosynthesis protein FLHA, putative, expressed
LOC_Os12g37540Os.2741.4.S1_x_at2/1112+23003155..23004784hypothetical protein
LOC_Os12g37550Os.18608.1.S1_at11/1112+23008967..23011524expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27695.1.S1_at--79--9291Chr12:22982795..22982819 (25 bp)
TCCGGGCCGCCATTGTAGACGAAGA
LOC_Os12g37510
Os.27695.1.S1_at--448--4231Chr12:22982720..22982744 (25 bp)
CCGACGAGGAGCTCCATGAGAGGTA
LOC_Os12g37510
Os.27695.1.S1_at--185--5771Chr12:22982691..22982715 (25 bp)
GACGAGTTCATACACCAGCTTAGGT
LOC_Os12g37510
Os.27695.1.S1_at--247--11Chr12:22982672..22982696 (25 bp)
TTAGGTTAAGCTCTCCTACGTACCT
LOC_Os12g37510
Os.27695.1.S1_at--894--9931Chr12:22982656..22982680 (25 bp)
TACGTACCTCGCCAGCTCATGAATG
LOC_Os12g37510
Os.27695.1.S1_at--44--1591Chr12:22982643..22982667 (25 bp)
AGCTCATGAATGAACCCCGTCTTGG
LOC_Os12g37510
Os.27695.1.S1_at--1115--4231Chr12:22982627..22982651 (25 bp)
CCGTCTTGGGCCCATGGATTGTAAT
LOC_Os12g37510
Os.27695.1.S1_at--408--7551Chr12:22982620..22982644 (25 bp)
GGGCCCATGGATTGTAATCCCTACA
LOC_Os12g37510
Os.27695.1.S1_at--564--3291Chr12:22982597..22982621 (25 bp)
CAAATAATAATGTCCTTCCTCCGTT
LOC_Os12g37510
Os.27695.1.S1_at--82--7191Chr12:22982408..22982432 (25 bp)
GTCTGTCTGTCATTTTGGATCATGC
LOC_Os12g37510
Os.27695.1.S1_at--915--4011Chr12:22982340..22982364 (25 bp)
CGTACGTGTGTCTGTCGGTCATTTT
LOC_Os12g37510
Target Sequence 
TCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGAC
GAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATG
AATGAACCCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATT
TTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAA
ATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCAT
TTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis