Browse Element(s) Details


OsAffx.3214.1.S1_at

Description tigr:9631.m01209
TID=OsAffx.3214.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1283011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12810Os.11971.1.S1_at11/113+6850918..6854501Maf family protein, putative, expressed
LOC_Os03g12820Os.8741.1.S1_at11/113+6874291..6877468Poly polymerase catalytic domain containing protein, expressed
LOC_Os03g12830OsAffx.3214.1.S1_at11/113+6878954..6879414hypothetical protein
LOC_Os03g12840Os.2488.1.S1_at11/113+6881231..6886590inositol 1, 3, 4-trisphosphate 5/6-kinase, putative, expressed
LOC_Os03g12850OsAffx.3215.1.S1_at11/113+6887259..6888246hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3214.1.S1_at--892--7211Chr03:6878984..6879008 (25 bp)
GTCGATCTGACGGTGCCACAGCCCA
LOC_Os03g12830
OsAffx.3214.1.S1_at--591--3311Chr03:6879000..6879024 (25 bp)
CACAGCCCACAGAACAAAAGAGAGA
LOC_Os03g12830
OsAffx.3214.1.S1_at--544--5991Chr03:6879019..6879043 (25 bp)
GAGAGAACGATGCAACGCCGGCGGC
LOC_Os03g12830
OsAffx.3214.1.S1_at--687--2591Chr03:6879032..6879056 (25 bp)
AACGCCGGCGGCATCCGTGAACTCT
LOC_Os03g12830
OsAffx.3214.1.S1_at--491--4691Chr03:6879039..6879063 (25 bp)
GCGGCATCCGTGAACTCTTGGAGCA
LOC_Os03g12830
OsAffx.3214.1.S1_at--455--3611Chr03:6879055..6879079 (25 bp)
CTTGGAGCAGATGTACTGTGTACAA
LOC_Os03g12830
OsAffx.3214.1.S1_at--741--8751Chr03:6879066..6879090 (25 bp)
TGTACTGTGTACAACGGCGATCGCA
LOC_Os03g12830
OsAffx.3214.1.S1_at--292--9931Chr03:6879068..6879092 (25 bp)
TACTGTGTACAACGGCGATCGCAGC
LOC_Os03g12830
OsAffx.3214.1.S1_at--345--4831Chr03:6879136..6879160 (25 bp)
GCTCACCAGTCACCATAGCGTAGGA
LOC_Os03g12830
OsAffx.3214.1.S1_at--619--7091Chr03:6879144..6879164 (21 bp)
GTCACCATAGCGTAGGAGAGGGCTT
LOC_Os03g12830
OsAffx.3214.1.S1_at--1091--971Chr03:6879157..6879384 (25 bp)
AGGAGAGGGCTTGATCCGAAACACT
LOC_Os03g12830
Target Sequence 
GTCGATCTGACGGTGCCACAGCCCACAGAACAAAAGAGAGAACGATGCAACGCCGGCGGCATCCGTGAACTCTTGGAGCA
GATGTACTGTGTACAACGGCGATCGCAGCGTCTCCTCCAGCGGCGGCAGTCGGCCTCCGGCCATCAGCACCCGCTCACCA
GTCACCATAGCGTAGGAGAGGGCTTGATCCGAAACACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis