Browse Element(s) Details


OsAffx.32144.1.S1_at

Description tigr:9640.m04098
TID=OsAffx.32144.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4179011/11Gamma-thionins family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41740NANA12+25828413..25829279hypothetical protein
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed
LOC_Os12g41820Os.11924.1.S1_at10/1112+25867850..25873944DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32144.1.S1_at--341--591Chr12:25852647..25852670 (24 bp)
ATGCCACTCCTGTTAACTTCAGGTG
LOC_Os12g41790
OsAffx.32144.1.S1_at--1009--2511Chr12:25853444..25853463 (20 bp)
AACTTCAGGTGTGTTTGCAGGGACA
LOC_Os12g41790
OsAffx.32144.1.S1_at--17--4611Chr12:25853483..25853507 (25 bp)
GCGACACCTTCTTCAGCAGGACGTA
LOC_Os12g41790
OsAffx.32144.1.S1_at--699--2071Chr12:25853486..25853510 (25 bp)
ACACCTTCTTCAGCAGGACGTACAA
LOC_Os12g41790
OsAffx.32144.1.S1_at--616--8111Chr12:25853501..25853525 (25 bp)
GGACGTACAAGTCGCTGTTCTGCAG
LOC_Os12g41790
OsAffx.32144.1.S1_at--901--7031Chr12:25853505..25853529 (25 bp)
GTACAAGTCGCTGTTCTGCAGGAAA
LOC_Os12g41790
OsAffx.32144.1.S1_at--296--3871Chr12:25853515..25853539 (25 bp)
CTGTTCTGCAGGAAAGGGCCGTGCA
LOC_Os12g41790
OsAffx.32144.1.S1_at--527--4491Chr12:25853532..25853556 (25 bp)
GCCGTGCAGGGAGCACTGCGACAAC
LOC_Os12g41790
OsAffx.32144.1.S1_at--38--4171Chr12:25853562..25853586 (25 bp)
CGCCGATGGTGGCTATTGCATCTTC
LOC_Os12g41790
OsAffx.32144.1.S1_at--320--8631Chr12:25853568..25853592 (25 bp)
TGGTGGCTATTGCATCTTCTTCTAC
LOC_Os12g41790
OsAffx.32144.1.S1_at--932--7531Chr12:25853570..25853594 (25 bp)
GTGGCTATTGCATCTTCTTCTACCT
LOC_Os12g41790
Target Sequence 
ATGCCACTCCTGTTAACTTCAGGTGTGTTTGCAGGGACAGTGAGGACAGAAGGCTGCGGCGACACCTTCTTCAGCAGGAC
GTACAAGTCGCTGTTCTGCAGGAAAGGGCCGTGCAGGGAGCACTGCGACAACGAGGGCGCCGATGGTGGCTATTGCATCT
TCTTCTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis