Browse Element(s) Details


OsAffx.32172.1.S1_s_at

Description tigr:9640.m04291
TID=OsAffx.32172.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4358011/11expressed protein
LOC_Os04g402001/11HNH endonuclease domain-containing protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
GO:0004519molecular_functionendonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32172.1.S1_s_at--129--9951Chr12:27013827..27013851 (25 bp)
TACGTTGCCTCAATCGCCGAAATCT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--647--2311Chr12:27015318..27015342 (25 bp)
AAAGTGCTCTGCTAGTGCTGCTGAT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--1011--2471Chr12:27015346..27015370 (25 bp)
AACACGCCCAATCTTGGAGCAGCAG
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--684--10851Chr12:27015359..27015383 (25 bp)
TTGGAGCAGCAGATGCGACCACGCT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--853--3831Chr12:27015401..27015425 (25 bp)
CTGCTGCGCAAGTTCACTGAAGCTT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--844--5392Chr12:27015419..27015466 (25 bp)
GAAGCTTCAACTAATCTGTACCAAT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--159--10731Chr12:27015697..27015721 (25 bp)
TTGAGTGGCAACTGGACTACTACTG
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--43--10451Chr12:27015782..27015806 (25 bp)
TTAGGTTTTGCGTCTGCCTTGTAAA
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--971--10451Chr12:27015809..27015833 (25 bp)
TTAGCAGTAGCAGGCTCCCTTTTGT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--497--10832Chr12:27015830..27015854 (25 bp)
TTGTGTCCGTCCGTCGAACTATCAT
LOC_Os12g43580
OsAffx.32172.1.S1_s_at--1154--5471Chr12:27015845..27015869 (25 bp)
GAACTATCATTGAGTCCTTCTTGAG
LOC_Os12g43580
Target Sequence 
TACGTTGCCTCAATCGCCGAAATCTCCAGCGATCAAATAAGTTCAAAGTGCTCTGCTAGTGCTGCTGATGCCAACACGCC
CAATCTTGGAGCAGCAGATGCGACCACGCTCAACAACCTCGCCGCACCTGCTGCGCAAGTTCACTGAAGCTTCAACTAAT
CTGTACCAATAGCTAGCAGGCAGACAGGAAGATTCGTTGACGATGACCAGGAATAAACGAGGCTAGCTTTCAGATTGATT
TGTCCAGCATAAAAAGGAAAGCGAAAAGGCATCCTTGATTGAGTGGCAACTGGACTACTACTGCCATAAGCATTCTTTTT
GCAGCTACTCCGTATCGGATATGAACACTAAGTATCTTTCTTGTTAGGTTTTGCGTCTGCCTTGTAAATATTAGCAGTAG
CAGGCTCCCTTTTGTGTCCGTCCGTCGAACTATCATTGAGTCCTTCTTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32172.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis