Browse Element(s) Details


OsAffx.32173.1.S1_at

Description tigr:9640.m04294
TID=OsAffx.32173.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4361011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein
LOC_Os12g43590Os.32636.1.S1_s_at11/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43590Os.11938.1.S1_at7/1112+27018375..27023368amine oxidase, putative, expressed
LOC_Os12g43600Os.28425.1.S1_x_at11/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_x_at6/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.46902.1.S1_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43600Os.47039.1.S1_x_at3/1112+27026634..27027599Glycine-rich RNA-binding protein GRP1A, putative, expressed
LOC_Os12g43610OsAffx.32173.1.S1_at11/1112+27038326..27038715hypothetical protein
LOC_Os12g43620OsAffx.32175.1.S1_at11/1112+27055096..27056542Helix-loop-helix DNA-binding domain containing protein
LOC_Os12g43630Os.4155.1.S1_at10/1112+27061048..27065748Malate dehydrogenase, glyoxysomal precursor, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32173.1.S1_at--581--6613Chr12:27038360..27038384 (25 bp)
GTTGGCCCCAAGCTTTGTCACTGGT
LOC_Os12g43610
OsAffx.32173.1.S1_at--117--10873Chr12:27038361..27038385 (25 bp)
TTGGCCCCAAGCTTTGTCACTGGTG
LOC_Os12g43610
OsAffx.32173.1.S1_at--196--8453Chr12:27038362..27038386 (25 bp)
TGGCCCCAAGCTTTGTCACTGGTGC
LOC_Os12g43610
OsAffx.32173.1.S1_at--873--8412Chr12:27038363..27038387 (25 bp)
GGCCCCAAGCTTTGTCACTGGTGCT
LOC_Os12g43610
OsAffx.32173.1.S1_at--444--4532Chr12:27038364..27038388 (25 bp)
GCCCCAAGCTTTGTCACTGGTGCTG
LOC_Os12g43610
OsAffx.32173.1.S1_at--41--4392Chr12:27038367..27038391 (25 bp)
CCAAGCTTTGTCACTGGTGCTGCCG
LOC_Os12g43610
OsAffx.32173.1.S1_at--155--3252Chr12:27038368..27038392 (25 bp)
CAAGCTTTGTCACTGGTGCTGCCGA
LOC_Os12g43610
OsAffx.32173.1.S1_at--55--2712Chr12:27038369..27038393 (25 bp)
AAGCTTTGTCACTGGTGCTGCCGAC
LOC_Os12g43610
OsAffx.32173.1.S1_at--217--3952Chr12:27038508..27038532 (25 bp)
CGGTAGCGGCTATGCCCGCGTCCGC
LOC_Os12g43610
OsAffx.32173.1.S1_at--49--3352Chr12:27038536..27038560 (25 bp)
CACGGCTGTCCTCGGCAGCAGCTAT
LOC_Os12g43610
OsAffx.32173.1.S1_at--41--8352Chr12:27038539..27038563 (25 bp)
GGCTGTCCTCGGCAGCAGCTATGCC
LOC_Os12g43610
Target Sequence 
GTTGGCCCCAAGCTTTGTCACTGGTGCTGCCGACGCCCATCTCCTCTCTCCACATGACCATCCTCGGCAGCAGCTGCGCC
CCCTCCGCGACCTCCCCGGGAGCGTCCTCGTCGGCGGCGGCGGCGGCCTCGCTCGCGACCGTCCTCGCCGGTAGCGGCTA
TGCCCGCGTCCGCCTCCACGGCTGTCCTCGGCAGCAGCTATGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32173.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis