Browse Element(s) Details


OsAffx.32344.1.S1_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=orf490
TID=OsAffx.32344.1
CNT=1
FEA=DNA_7
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=orf490 (Oryza sativa (japonica cultivar-group)) mitochondrion
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g340405/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g216705/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34010OsAffx.32248.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34010OsAffx.32247.1.S1_x_at11/1112+20503661..20505169Cytochrome c biosynthesis ccmC-like mitochondrial protein, putative
LOC_Os12g34019NANA12+20508109..20508631NA
LOC_Os12g34030OsAffx.26050.28.S1_s_at11/1112+20516325..20517516hypothetical protein
LOC_Os12g34040OsAffx.32344.1.S1_at5/1112+20517912..20519016retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g34050NANA12+20532542..20533825retrotransposon protein, putative, unclassified
LOC_Os12g34060OsAffx.19957.1.S1_at8/1112+20540298..20542028hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32344.1.S1_at--74--1213Chr06:12512127..12512151 (25 bp)
AGTTTGCCAATATCTACATGCTCCC
LOC_Os06g21670
OsAffx.32344.1.S1_at--462--6372Chr06:12512201..12512225 (25 bp)
GATCCTTGGGACTTGGTCTTCGAAT
LOC_Os06g21670
OsAffx.32344.1.S1_at--564--1172Chr06:12512247..12512271 (25 bp)
AGTAAGTGCGTTCTCAGATGCTGAT
LOC_Os06g21670
OsAffx.32344.1.S1_at--891--772Chr06:12512280..12512304 (25 bp)
ATGTCCAGATGATCGCAAGTCCACT
LOC_Os06g21670
OsAffx.32344.1.S1_at--353--7693Chr06:12512308..12512332 (25 bp)
GGGTTTGCAGTATTCTTGGGAGCTA
LOC_Os06g21670
OsAffx.32344.1.S1_at--826--3651Chr12:20517784..20517808 (25 bp)
CTTACTCAAGGAACGCGGCATAGCT
NONE
OsAffx.32344.1.S1_at--286--5613Chr06:12512494..12512518 (25 bp)
GACAATATTGGTGCGACCTCCTTAT
NONE
OsAffx.32344.1.S1_at--209--3673Chr06:12512514..12512538 (25 bp)
CTTATCAGCAAATCCAGTCTTCCAT
NONE
OsAffx.32344.1.S1_at--665--7512Chr06:12512560..12512584 (25 bp)
GTGGATTACCACTTTGTGCGTGAAC
NONE
OsAffx.32344.1.S1_at--85--6511Chr12:20517621..20517645 (25 bp)
GATATTCGGTTTGTTCCTTCAGGAG
NONE
OsAffx.32344.1.S1_at--244--1313Chr06:12512640..12513017 (25 bp)
AGATGGCTTCACCTGTAACCGACCT
NONE
Target Sequence 
AGTTTGCCAATATCTACATGCTCCCACTTCATTGCACTGGACAGCAGTTAAGCGCATATTGAGATATCTCAAAGGATCCT
TGGGACTTGGTCTTCGAATTTGCAAGTCAGATTCAACTCTAGTAAGTGCGTTCTCAGATGCTGATTGGGCAGGATGTCCA
GATGATCGCAAGTCCACTGGAGGGTTTGCAGTATTCTTGGGAGCTAATCTGATTTCTTGGAATGCTTGGAAGCAGGCAAC
TGTTTCAAGATCAAGTACCGAAGCAGAATACAAAGCCTTGGCAAATGCTACTGCAGAAATTATTTCGGTTCAAACCTTAC
TCAAGGAACGCGGCATAGCTCAGCCGCGGGCTGCATGCTTGTGGTGTGACAATATTGGTGCGACCTCCTTATCAGCAAAT
CCAGTCTTCCATGCGCGAACTAAGCACATAGAAGTGGATTACCACTTTGTGCGTGAACGAGTGTCTCAAGGGTTGCTGGA
TATTCGGTTTGTTCCTTCAGGAGATCAAGTAGCAGATGGCTTCACCTGTAACCGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis