Browse Element(s) Details


OsAffx.3306.1.S1_at

Description tigr:9631.m02378
TID=OsAffx.3306.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2440010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24360NANA3+13844696..13850851transposon protein, putative, unclassified
LOC_Os03g24370NANA3+13851483..13854719transposon protein, putative, unclassified
LOC_Os03g24380Os.8539.1.S1_at11/113+13857887..13861346glutathione peroxidase, putative, expressed
LOC_Os03g24390OsAffx.3305.1.S1_at11/113+13862507..13866586rhomboid protein, putative, expressed
LOC_Os03g24400OsAffx.3306.1.S1_at10/113+13872174..13873937hypothetical protein
LOC_Os03g24400OsAffx.8626.1.S1_at1/113+13872174..13873937hypothetical protein
LOC_Os03g24410OsAffx.25204.1.S1_at11/113+13883541..13886129hypothetical protein
LOC_Os03g24420OsAffx.3307.1.S1_at11/113+13889373..13892968hypothetical protein
LOC_Os03g24430NANA3+13894821..13896338Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3306.1.S1_at--775--1071NONE
AGGGCGTGAACATTACCTCTTGTCG
NONE
OsAffx.3306.1.S1_at--402--3591Chr03:13873018..13873042 (25 bp)
CATTACCTCTTGTCGGAGATTCAGA
LOC_Os03g24400
OsAffx.3306.1.S1_at--323--6571Chr03:13873035..13873059 (25 bp)
GATTCAGAGCAGTAGCAGTCCTCCA
LOC_Os03g24400
OsAffx.3306.1.S1_at--894--1171Chr03:13873045..13873069 (25 bp)
AGTAGCAGTCCTCCAGCTGGTGAAC
LOC_Os03g24400
OsAffx.3306.1.S1_at--894--1611Chr03:13873059..13873083 (25 bp)
AGCTGGTGAACGTATTCGCATGGCA
LOC_Os03g24400
OsAffx.3306.1.S1_at--101--851Chr03:13873556..13873580 (25 bp)
ATGGCAATTATGATACCTTTAGTTT
LOC_Os03g24400
OsAffx.3306.1.S1_at--1010--2231Chr03:13873591..13873615 (25 bp)
AAATCAAATTCGTTGTCCAAGGAGA
LOC_Os03g24400
OsAffx.3306.1.S1_at--77--6491Chr03:13873621..13873645 (25 bp)
GATACTGATTCTCATTCTGATATTA
LOC_Os03g24400
OsAffx.3306.1.S1_at--506--6131Chr03:13873667..13873789 (25 bp)
GAGGTAGATCTTCCCAAAAGCTTTA
LOC_Os03g24400
OsAffx.3306.1.S1_at--449--2631Chr03:13873834..13873858 (25 bp)
AACCTGCTGAGGATAATTTTGTTGC
LOC_Os03g24400
OsAffx.3306.1.S1_at--933--8371Chr03:13873872..13873896 (25 bp)
GGCGAGGTTCTAATCAGCACTGCTA
LOC_Os03g24400
Target Sequence 
AGGGCGTGAACATTACCTCTTGTCGGAGATTCAGAGCAGTAGCAGTCCTCCAGCTGGTGAACGTATTCGCATGGCAGAAG
AAATTATGTTTTATGGCAATTATGATACCTTTAGTTTTGATGATGTTAAATCAAATTCGTTGTCCAAGGAGAAATTTGAT
ACTGATTCTCATTCTGATATTAAAGCTGAGGGGTTAATTGTTAGAGGTAGATCTTCCCAAAAGCTTTATAAGTTGAAAAG
GAAGAAAGAAAGATCTAAAACTCAAAATGAAAAACCTGCTGAGGATAATTTTGTTGCTAATGATTCTGATGGCGAGGTTC
TAATCAGCACTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis