Browse Element(s) Details


OsAffx.3307.1.S1_at

Description tigr:9631.m02380
TID=OsAffx.3307.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2442011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24390OsAffx.3305.1.S1_at11/113+13862507..13866586rhomboid protein, putative, expressed
LOC_Os03g24400OsAffx.3306.1.S1_at10/113+13872174..13873937hypothetical protein
LOC_Os03g24400OsAffx.8626.1.S1_at1/113+13872174..13873937hypothetical protein
LOC_Os03g24410OsAffx.25204.1.S1_at11/113+13883541..13886129hypothetical protein
LOC_Os03g24420OsAffx.3307.1.S1_at11/113+13889373..13892968hypothetical protein
LOC_Os03g24430NANA3+13894821..13896338Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os03g24440OsAffx.25205.1.S1_at11/113+13901614..13902600cytokinin synthase, putative
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3307.1.S1_at--1062--2771Chr03:13889863..13889884 (22 bp)
AAGAGCACAAGCTGAGGCCCAGAGC
LOC_Os03g24420
OsAffx.3307.1.S1_at--1083--7851Chr03:13889799..13889823 (25 bp)
GGTTTGTAGAAAAGCCCCTTGCAGA
LOC_Os03g24420
OsAffx.3307.1.S1_at--975--1311Chr03:13889720..13889744 (25 bp)
AGAGGCAATCCTCATCTTCATATTA
LOC_Os03g24420
OsAffx.3307.1.S1_at--203--351Chr03:13889686..13889710 (25 bp)
ATAACAGTCAAATCTATGCGAGCAT
LOC_Os03g24420
OsAffx.3307.1.S1_at--138--2591Chr03:13889651..13889675 (25 bp)
AACGATGAATCCATGGCAAGCTATA
LOC_Os03g24420
OsAffx.3307.1.S1_at--301--7351Chr03:13889611..13889635 (25 bp)
GTGCAAACCCAAATGGTGCCTCCTA
LOC_Os03g24420
OsAffx.3307.1.S1_at--760--8991Chr03:13889511..13889535 (25 bp)
TGAAGAAGGTTACCGCTCTCGTGGT
LOC_Os03g24420
OsAffx.3307.1.S1_at--628--9511Chr03:13889495..13889519 (25 bp)
TCTCGTGGTTGGGTCACCGGAGAAA
LOC_Os03g24420
OsAffx.3307.1.S1_at--56--2431Chr03:13889473..13889497 (25 bp)
AAAAGACTTGGAGCGGCCAGCACCA
LOC_Os03g24420
OsAffx.3307.1.S1_at--306--7811Chr03:13889439..13889463 (25 bp)
GGTCAGGTTGAAGGGCAAGCCCCAC
LOC_Os03g24420
OsAffx.3307.1.S1_at--222--2351Chr03:13889410..13889434 (25 bp)
AAAGAAACTTTGTCATGCCCCTAGC
LOC_Os03g24420
Target Sequence 
AAGAGCACAAGCTGAGGCCCAGAGCCTTAGGGGTGGTCATATTTGTAAGAGATGGAGAGTACAAGGTTTGTAGAAAAGCC
CCTTGCAGATGGGTAAATTACACGAGCATACCAAATGCAAAGAAGAATTCTAAAATAAATAAAAGAGGCAATCCTCATCT
TCATATTATTTACAAGAATAACAGTCAAATCTATGCGAGCATAGATGACGAAAACGATGAATCCATGGCAAGCTATAGAA
TGGAGATTCTAGGTGCAAACCCAAATGGTGCCTCCTACATTTGGAGGTCGAAGCAAGCAAGCATGCCAACAGTGAATACA
TCAACTGCAACTAAGAGATCTGTCATCGGGGATGAAGAAGGTTACCGCTCTCGTGGTTGGGTCACCGGAGAAAAGACTTG
GAGCGGCCAGCACCACCTTCCAAGGGTCAGGTTGAAGGGCAAGCCCCACACTCAAAGAAACTTTGTCATGCCCCTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis