Browse Element(s) Details


OsAffx.25205.1.S1_at

Description tigr:9631.m02382
TID=OsAffx.25205.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA isopentenyl transferase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2444011/11cytokinin synthase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24410OsAffx.25204.1.S1_at11/113+13883541..13886129hypothetical protein
LOC_Os03g24420OsAffx.3307.1.S1_at11/113+13889373..13892968hypothetical protein
LOC_Os03g24430NANA3+13894821..13896338Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os03g24440OsAffx.25205.1.S1_at11/113+13901614..13902600cytokinin synthase, putative
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009691biological_processcytokinin biosynthesis
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25205.1.S1_at--684--491Chr03:13902018..13902042 (25 bp)
ATCGGGCTACCCGAGATGCACGGAT
LOC_Os03g24440
OsAffx.25205.1.S1_at--392--7591Chr03:13902015..13902039 (25 bp)
GGGCTACCCGAGATGCACGGATACC
LOC_Os03g24440
OsAffx.25205.1.S1_at--1142--9951Chr03:13902011..13902035 (25 bp)
TACCCGAGATGCACGGATACCTGCT
LOC_Os03g24440
OsAffx.25205.1.S1_at--827--1291Chr03:13902005..13902029 (25 bp)
AGATGCACGGATACCTGCTGGCGGA
LOC_Os03g24440
OsAffx.25205.1.S1_at--331--1931Chr03:13901999..13902023 (25 bp)
ACGGATACCTGCTGGCGGAGCGCGA
LOC_Os03g24440
OsAffx.25205.1.S1_at--531--1271Chr03:13901909..13901933 (25 bp)
AGATCAAGGACAACACGTTCCGCCT
LOC_Os03g24440
OsAffx.25205.1.S1_at--104--331Chr03:13901907..13901931 (25 bp)
ATCAAGGACAACACGTTCCGCCTCA
LOC_Os03g24440
OsAffx.25205.1.S1_at--869--4491Chr03:13901691..13901715 (25 bp)
GCCGTCGTTGCCAACGGCAAAGTCG
LOC_Os03g24440
OsAffx.25205.1.S1_at--450--6691Chr03:13901685..13901709 (25 bp)
GTTGCCAACGGCAAAGTCGACGTGA
LOC_Os03g24440
OsAffx.25205.1.S1_at--845--3231Chr03:13901680..13901704 (25 bp)
CAACGGCAAAGTCGACGTGAACGTC
LOC_Os03g24440
OsAffx.25205.1.S1_at--268--3271Chr03:13901674..13901698 (25 bp)
CAAAGTCGACGTGAACGTCGGCGAC
LOC_Os03g24440
Target Sequence 
ATCGGGCTACCCGAGATGCACGGATACCTGCTGGCGGAGCGCGAGGGCGGCGCCGGCGCCGAGGACGACGACGACCTCCT
CGCCGGCATGCTCGAGGCCGCCGTGCGCGAGATCAAGGACAACACGTTCCGCCTCACCGTGTCGCAGGTGGCCAAGATCC
GGCGCCTCAGCGCGCTGCCCGGGTGGGACGTCCGGCGCGTGGACGCGACGGCGGTGGTGGCGCGCATGGCGGAGGGCGCG
CCCCACGGCGAGACGTGGAGGGAGGTGGTGTGGGAGCCGTGCGAGGAGATGGTCAGCCGCTTCCTCGAGACGCCCGCCGC
CGCCGCCGCCGTCGTTGCCAACGGCAAAGTCGACGTGAACGTCGGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis