Browse Element(s) Details


Os.26468.1.S2_at

Description gb:AK073091.1
DB_XREF= gi:32983114
TID=Os.26468.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033022E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033022E01, full insert sequence.
FL= gb:AK073091.1 gb:AK063182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2446010/11branched-chain amino acid aminotransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24430NANA3+13894821..13896338Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os03g24440OsAffx.25205.1.S1_at11/113+13901614..13902600cytokinin synthase, putative
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24500OsAffx.3308.1.S1_at11/113+13945187..13946610hypothetical protein
LOC_Os03g24510Os.53356.1.S1_at11/113+13948943..13950640galactinol synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0046654biological_processtetrahydrofolate biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0003824molecular_functioncatalytic activity
GO:0008696molecular_function4-amino-4-deoxychorismate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26468.1.S2_at--376--5871Chr03:13921823..13921847 (25 bp)
GAGCCTGGTGTTACATGAACGTCGC
LOC_Os03g24460
Os.26468.1.S2_at--753--5451Chr03:13921807..13921831 (25 bp)
GAACGTCGCATTAGTTTATCAGAAT
LOC_Os03g24460
Os.26468.1.S2_at--200--631NONE
ATGCTGCAGACGAGGTATGGACTAC
NONE
Os.26468.1.S2_at--680--10091Chr03:13920986..13921010 (25 bp)
TATGGACTACTGGAACGATGGGTGA
LOC_Os03g24460
Os.26468.1.S2_at--648--791Chr03:13920642..13920993 (25 bp)
ATGGGTGAAATCACACCGGTCGTAA
LOC_Os03g24460
Os.26468.1.S2_at--632--1011Chr03:13920583..13920607 (25 bp)
AGGTCCGGTCACAAGACAAATCCAG
LOC_Os03g24460
Os.26468.1.S2_at--634--3551Chr03:13920544..13920568 (25 bp)
CATAACTGCAGGTTCTGGAGTAACA
LOC_Os03g24460
Os.26468.1.S2_at--356--7051Chr03:13920525..13920549 (25 bp)
GTAACAATACCCAGAAATGCCGATG
LOC_Os03g24460
Os.26468.1.S2_at--375--1051Chr03:13920494..13920518 (25 bp)
AGGTGTATATGCCTTCCTGGTCTAC
LOC_Os03g24460
Os.26468.1.S2_at--809--6331Chr03:13920416..13920440 (25 bp)
GATGCATCACTAAATTGTCGTGCCA
LOC_Os03g24460
Os.26468.1.S2_at--117--671Chr03:13920377..13920401 (25 bp)
ATGAAGCATGTACTCTGTTTTTCTT
LOC_Os03g24460
Target Sequence 
GAGCCTGGTGTTACATGAACGTCGCATTAGTTTATCAGAATTTCATGCTGCAGACGAGGTATGGACTACTGGAACGATGG
GTGAAATCACACCGGTCGTAATGATTGATGGTCGTGAAATTGGTGACGGGAAAATAGGTCCGGTCACAAGACAAATCCAG
AATGCATACAAAGTCATAACTGCAGGTTCTGGAGTAACAATACCCAGAAATGCCGATGAATAACAGGTGTATATGCCTTC
CTGGTCTACCTGCCGGAACCAGTNTAAAGCAAACTTGATTGTTAGAGAAATAAATGTGAAAAGATGCATCACTAAATTGT
CGTGCCAATTGGAAAATGTGTATGAAGCATGTACTCTGTTTTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26468.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis